DRSC/TRiP Functional Genomics Resources

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Protein Alignment sei and Kcnh2

DIOPT Version :9

Sequence 1:NP_001286814.1 Gene:sei / 37843 FlyBaseID:FBgn0003353 Length:855 Species:Drosophila melanogaster
Sequence 2:NP_038597.2 Gene:Kcnh2 / 16511 MGIID:1341722 Length:1162 Species:Mus musculus


Alignment Length:553 Identity:367/553 - (66%)
Similarity:438/553 - (79%) Gaps:27/553 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 DKEALLGSKSEPKGQDPNDMIT---SLGGNILLDQKLQNNYYHKWTLLHYSPFKAVWDWIILILV 331
            |:| ::..|.:.:..:..:.:|   |||.::|.:.|||....|:||:||||||||||||:||:||
Mouse   357 DRE-IIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLV 420

  Fly   332 MYTAIFTPYVAAFLLGEQD--YQRRNSKYINSDPIVIIDLIVDVTFIVDIIINFRTTFVNSQDEV 394
            :|||:||||.|||||.|.:  .|..:..|. ..|:.::|||||:.|||||:||||||:||:.:||
Mouse   421 IYTAVFTPYSAAFLLKETEDGSQAPDCGYA-CQPLAVVDLIVDIMFIVDILINFRTTYVNANEEV 484

  Fly   395 VSHPGRIAVHYLSGWFLIDLVAAVPFDLLLVGSDTDETTTLIGLLKTARLLRLVRVARKIDRYSE 459
            |||||||||||..||||||:|||:|||||:.||.::|   |||||||||||||||||||:|||||
Mouse   485 VSHPGRIAVHYFKGWFLIDMVAAIPFDLLIFGSGSEE---LIGLLKTARLLRLVRVARKLDRYSE 546

  Fly   460 YGAAVLILLMATFILIAHWLACIWYAIGNAEKSIASKNIGWLNSLAYDIQEPYFDNRTGGPSIKS 524
            ||||||.|||.||.|||||||||||||||.|:.....:||||::|...|.:||..:..||||||.
Mouse   547 YGAAVLFLLMCTFALIAHWLACIWYAIGNMEQPHMDSHIGWLHNLGDQIGKPYNSSGLGGPSIKD 611

  Fly   525 RYITALYFTFTSLTSVGFGNVAPNTDAEKAFTICVMLVGSLMYASIFGNVSAIIQRLYSGTARYH 589
            :|:|||||||:||||||||||:|||::||.|:|||||:|||||||||||||||||||||||||||
Mouse   612 KYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYH 676

  Fly   590 TQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSLLKGFPECLQADICLHLNRKLLTT 654
            |||||||||||||||||||||||||||||||:||||||||::||||||||||||||||||.||..
Mouse   677 TQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQH 741

  Fly   655 CAAFSEASPGCLRAFSLKFKTTHAPPGDILVHRGDVLTSLYFIARGSIEIQRAGNIVV--LGKND 717
            |..|..|:.|||||.::|||||||||||.|||.||:||:||||:||||||.| |::||  |||||
Mouse   742 CKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEILR-GDVVVAILGKND 805

  Fly   718 IFGENPCIYPTVGKSNGVVRALTYCDIHKLHRDDLLDVLDSYPEFLESFVSNLVITYNMRD---- 778
            ||||...:|...|||||.||||||||:||:||||||:|||.||||.:.|.|:|.||:|:||    
Mouse   806 IFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLRDTNMI 870

  Fly   779 -------DEHSGVDIKHRYLRAKSSDKMRSSPD 804
                   :..||.   :|..:.|.|.:.|:..|
Mouse   871 PGSPGSAELESGF---NRQRKRKLSFRRRTDKD 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seiNP_001286814.1 Ion_trans 360..583 CDD:278921 162/222 (73%)
Ion_trans_2 <526..580 CDD:285168 45/53 (85%)
CAP_ED 657..767 CDD:237999 77/111 (69%)
Crp 666..>766 CDD:223736 73/101 (72%)
Kcnh2NP_038597.2 PAS_9 29..130 CDD:290162
PAS 41..132 CDD:238075
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 233..316
Ion_trans 451..670 CDD:278921 162/221 (73%)
Ion_trans_2 <613..667 CDD:285168 45/53 (85%)
Selectivity filter. /evidence=ECO:0000250 626..631 4/4 (100%)
Crp 738..>858 CDD:223736 82/120 (68%)
CAP_ED 744..855 CDD:237999 77/111 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 873..991 7/31 (23%)
SSTK-IP 1015..1116 CDD:292464
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1125..1162
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167835150
Domainoid 1 1.000 385 1.000 Domainoid score I806
eggNOG 1 0.900 - - E1_KOG0498
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 710 1.000 Inparanoid score I642
Isobase 1 0.950 - 0 Normalized mean entropy S3650
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000148
OrthoInspector 1 1.000 - - otm43136
orthoMCL 1 0.900 - - OOG6_100845
Panther 1 1.100 - - O PTHR10217
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5087
SonicParanoid 1 1.000 - - X71
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.730

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