DRSC/TRiP Functional Genomics Resources

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Protein Alignment sei and Hcn1

DIOPT Version :9

Sequence 1:NP_001286814.1 Gene:sei / 37843 FlyBaseID:FBgn0003353 Length:855 Species:Drosophila melanogaster
Sequence 2:NP_034538.2 Gene:Hcn1 / 15165 MGIID:1096392 Length:910 Species:Mus musculus


Alignment Length:512 Identity:138/512 - (26%)
Similarity:239/512 - (46%) Gaps:69/512 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   311 WTLLHYSPFKAVWDWIILILVMYTAIFTPYVAAFLLGEQDYQRRNSKYINSDPIVIIDLIVDVTF 375
            |.:..||.|:..||.|:||:::...:..|....|.. ||          .:.|.:|.::..|..|
Mouse   122 WIIHPYSDFRFYWDLIMLIMMVGNLVIIPVGITFFT-EQ----------TTTPWIIFNVASDTVF 175

  Fly   376 IVDIIINFRTTFVN-SQDEVVSHPGRIAVHYLSGWFLIDLVAAVPFDLLLV----GSDTDETTTL 435
            ::|:|:||||..|| ...|::..|..|.::||..||::|.::::|.|.:.:    |.|::...|.
Mouse   176 LLDLIMNFRTGTVNEDSSEIILDPKVIKMNYLKSWFVVDFISSIPVDYIFLIVEKGMDSEVYKTA 240

  Fly   436 IGL--------LKTARLLRLVRVARKIDRYSE-----YGAAVLIL----LMATFILIAHWLACIW 483
            ..|        |...|||||.|:.|.|.::.|     |..|..::    |:...:|:.||..|:.
Mouse   241 RALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLCHWDGCLQ 305

  Fly   484 YAIGNAEKSIASKNIGW--LNSLAYDIQEPYFDNRTGGPSIKSRYITALYFTFTSLTSVGFGNVA 546
            :.:...:.....   .|  ||.:..|             |...:|..||:...:.:..:|:|..|
Mouse   306 FLVPLLQDFPPD---CWVSLNEMVND-------------SWGKQYSYALFKAMSHMLCIGYGAQA 354

  Fly   547 PNTDAEKAFTICVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQR 611
            |.:.::...|:..|:||:..||...|:.:|:||.|.|...:|..:..:|.:::.||::|..:||:
Mouse   355 PVSMSDLWITMLSMIVGATCYAMFVGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQK 419

  Fly   612 LEEYFQHAWTYTNGI-DMNSLLKGFPECLQADICLHLNRKLLTTCAAFSEASPGCLRAFSLKFKT 675
            :.:|::|  .|...| |..::|....:.|:.:|.....|||:.|...|:.|.|..:.|...|.:.
Mouse   420 IHDYYEH--RYQGKIFDEENILSELNDPLREEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRF 482

  Fly   676 THAPPGDILVHRGDVLTSLYFIARG-SIEIQRAGNIVVLGKNDIFGENPCIYPTVGKSNGVVRAL 739
            ....|||.::..|.|...:|||..| :..|.::...:.|.....||| .|:. |.|:....|||.
Mouse   483 EVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKEMKLTDGSYFGE-ICLL-TKGRRTASVRAD 545

  Fly   740 TYCDIHKLHRDDLLDVLDSYPEFLESFVS------------NLVITYNMRDDEHSGV 784
            |||.::.|..|:..:||:.||....:|.:            |.::....:.|.::||
Mouse   546 TYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILLQKFQKDLNTGV 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seiNP_001286814.1 Ion_trans 360..583 CDD:278921 66/246 (27%)
Ion_trans_2 <526..580 CDD:285168 16/53 (30%)
CAP_ED 657..767 CDD:237999 34/110 (31%)
Crp 666..>766 CDD:223736 31/100 (31%)
Hcn1NP_034538.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..75
Ion_trans_N 87..129 CDD:285597 2/6 (33%)
Ion_trans 149..394 CDD:278921 71/271 (26%)
Selectivity filter. /evidence=ECO:0000305|PubMed:12089064 347..351 1/3 (33%)
Crp 458..>593 CDD:223736 38/136 (28%)
CAP_ED 464..572 CDD:237999 34/109 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 634..681
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 771..791
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 865..910
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167835143
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0498
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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