DRSC/TRiP Functional Genomics Resources

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Protein Alignment sei and Kcnh2

DIOPT Version :9

Sequence 1:NP_001286814.1 Gene:sei / 37843 FlyBaseID:FBgn0003353 Length:855 Species:Drosophila melanogaster
Sequence 2:XP_006235929.2 Gene:Kcnh2 / 117018 RGDID:621414 Length:1234 Species:Rattus norvegicus


Alignment Length:550 Identity:365/550 - (66%)
Similarity:439/550 - (79%) Gaps:21/550 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 DKEALLGSKSEPKGQDPNDMIT---SLGGNILLDQKLQNNYYHKWTLLHYSPFKAVWDWIILILV 331
            |:| ::..|.:.:..:..:.:|   |||.::|.:.|||....|:||:||||||||||||:||:||
  Rat   428 DRE-IIAPKIKERTHNVTEKVTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLV 491

  Fly   332 MYTAIFTPYVAAFLLGEQD--YQRRNSKYINSDPIVIIDLIVDVTFIVDIIINFRTTFVNSQDEV 394
            :|||:||||.|||||.|.:  .|..:..|. ..|:.::||:||:.|||||:||||||:||:.:||
  Rat   492 IYTAVFTPYSAAFLLKETEDGSQAPDCGYA-CQPLAVVDLLVDIMFIVDILINFRTTYVNANEEV 555

  Fly   395 VSHPGRIAVHYLSGWFLIDLVAAVPFDLLLVGSDTDETTTLIGLLKTARLLRLVRVARKIDRYSE 459
            |||||||||||..||||||:|||:|||||:.||.::|   |||||||||||||||||||:|||||
  Rat   556 VSHPGRIAVHYFKGWFLIDMVAAIPFDLLIFGSGSEE---LIGLLKTARLLRLVRVARKLDRYSE 617

  Fly   460 YGAAVLILLMATFILIAHWLACIWYAIGNAEKSIASKNIGWLNSLAYDIQEPYFDNRTGGPSIKS 524
            ||||||.|||.||.|||||||||||||||.|:.....:||||::|...|.:||..:..||||||.
  Rat   618 YGAAVLFLLMCTFALIAHWLACIWYAIGNMEQPHMDSHIGWLHNLGDQIGKPYNSSGLGGPSIKD 682

  Fly   525 RYITALYFTFTSLTSVGFGNVAPNTDAEKAFTICVMLVGSLMYASIFGNVSAIIQRLYSGTARYH 589
            :|:|||||||:||||||||||:|||::||.|:|||||:|||||||||||||||||||||||||||
  Rat   683 KYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYH 747

  Fly   590 TQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSLLKGFPECLQADICLHLNRKLLTT 654
            |||||||||||||||||||||||||||||||:||||||||::||||||||||||||||||.||..
  Rat   748 TQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQH 812

  Fly   655 CAAFSEASPGCLRAFSLKFKTTHAPPGDILVHRGDVLTSLYFIARGSIEIQRAGNIVV--LGKND 717
            |..|..|:.|||||.::|||||||||||.|||.||:||:||||:||||||.| |::||  |||||
  Rat   813 CKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEILR-GDVVVAILGKND 876

  Fly   718 IFGENPCIYPTVGKSNGVVRALTYCDIHKLHRDDLLDVLDSYPEFLESFVSNLVITYNMRD---- 778
            ||||...:|...|||||.||||||||:||:||||||:|||.||||.:.|.|:|.||:|:||    
  Rat   877 IFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLRDTNMI 941

  Fly   779 -DEHSGVDIK---HRYLRAKSSDKMRSSPD 804
             ...|..:::   :|..:.|.|.:.|:..|
  Rat   942 PGSPSSAELESGFNRQRKRKLSFRRRTDKD 971

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seiNP_001286814.1 Ion_trans 360..583 CDD:278921 161/222 (73%)
Ion_trans_2 <526..580 CDD:285168 45/53 (85%)
CAP_ED 657..767 CDD:237999 77/111 (69%)
Crp 666..>766 CDD:223736 73/101 (72%)
Kcnh2XP_006235929.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338746
Domainoid 1 1.000 385 1.000 Domainoid score I773
eggNOG 1 0.900 - - E1_KOG0498
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 711 1.000 Inparanoid score I617
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000148
OrthoInspector 1 1.000 - - otm45204
orthoMCL 1 0.900 - - OOG6_100845
Panther 1 1.100 - - O PTHR10217
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X71
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.750

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