DRSC/TRiP Functional Genomics Resources

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Protein Alignment sei and kcnh1b

DIOPT Version :10

Sequence 1:NP_476713.1 Gene:sei / 37843 FlyBaseID:FBgn0003353 Length:855 Species:Drosophila melanogaster
Sequence 2:XP_009294796.1 Gene:kcnh1b / 101154640 ZFINID:ZDB-GENE-121128-4 Length:965 Species:Danio rerio


Alignment Length:571 Identity:239/571 - (41%)
Similarity:343/571 - (60%) Gaps:40/571 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 ITSLGGNILLDQKLQNNYYHKWTLLHYSPFKAVWDWIILILVMYTAIFTPYVAAFLLGEQDYQRR 354
            :..||.:||...|.:........:|||..||..|||:||||..||||..||..:|...:      
Zfish   194 VLQLGSDILPQYKQEAPKTPPHIILHYCTFKTTWDWVILILTFYTAIMVPYNVSFKTKQ------ 252

  Fly   355 NSKYINSDPIVIIDLIVDVTFIVDIIINFRTTFVNSQDEVVSHPGRIAVHYLSGWFLIDLVAAVP 419
                 |:...:::|.||||.|:|||::||.||||....||:|.|..|.::|:..||:|||::.:|
Zfish   253 -----NNVTWLVVDSIVDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYVKTWFVIDLLSCLP 312

  Fly   420 FDLLLVGSDTDE-TTTLIGLLKTARLLRLVRVARKIDRYSEYGAAVLILLMATFILIAHWLACIW 483
            :|::....:.|| .::|...||..|||||.|||||:|.|.|||||||:||:..|.|.||||||||
Zfish   313 YDVINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWLACIW 377

  Fly   484 YAIGNAEKSIASKNI----GWLNSLAYDIQEPYFDNRT------GGPSIKSRYITALYFTFTSLT 538
            |:||:.|......|:    .||..|...:.:||..|.:      ||||..|.|||:||||.||||
Zfish   378 YSIGDYEVIDQDANMVRTDSWLYLLGEAVGQPYHFNASGSGKWEGGPSKDSVYITSLYFTMTSLT 442

  Fly   539 SVGFGNVAPNTDAEKAFTICVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQ 603
            |:||||:||.||.||.|.:.:|::|||:||:|||||:.|.|::|:.|.|||..:..||:|::.:|
Zfish   443 SIGFGNIAPTTDGEKIFAVAMMMIGSLLYATIFGNVTNIFQQMYANTNRYHEMLNSVRDFLKLYQ 507

  Fly   604 IPNPLRQRLEEYFQHAWTYTNGIDMNSLLKGFPECLQADICLHLNRKLLTTCAAFSEASPGCLRA 668
            :|..|.:|:.:|....|:.:.|||.:.:|:..|:.::||||:|||||:.....||..||.|||||
Zfish   508 VPKGLSERVMDYIVSTWSMSRGIDTDKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRA 572

  Fly   669 FSLKFKTTHAPPGDILVHRGDVLTSLYFIARGSIEIQRAGNIV-VLGKNDIFGENPCIYPTVGKS 732
            .:::|:|.|:.|||::.|.|:.:.||.|:..||:|:.:...:| :|||.|:||:.......:.:|
Zfish   573 LAMEFQTIHSAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEVNLAQS 637

  Fly   733 NGVVRALTYCDIHKLHRDDLLDVLDSYPEFLESFVSNLVITYNMRDD--EHSGVDIK---HRYLR 792
            ...||||||||:|.:.||.|..||:.|..|...|..|||:|||:|..  .....|:|   ...||
Zfish   638 CANVRALTYCDLHIIKRDALQKVLEFYTAFAGHFSRNLVLTYNLRKRIVFRKISDVKREEEEMLR 702

  Fly   793 AKSSDKMRSSPDIPSIRIVGLRYKKQ-----------NVNTSVHKVKNDNS 832
            .|:...:...||.| :|.:..|:::|           .|...|.|.|::.:
Zfish   703 RKNEAPLNLPPDHP-VRRLFQRFRQQREARLAAERANQVEQDVEKGKSEQT 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seiNP_476713.1 Ion_trans 322..583 CDD:459842 131/271 (48%)
CAP_ED 657..767 CDD:237999 47/110 (43%)
kcnh1bXP_009294796.1 PAS_9 48..142 CDD:463873
PLN03192 227..>627 CDD:215625 189/410 (46%)
PRK11753 588..>692 CDD:236969 40/103 (39%)
Blue background indicates that the domain is not in the aligned region.

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