DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sei and cnga1

DIOPT Version :9

Sequence 1:NP_001286814.1 Gene:sei / 37843 FlyBaseID:FBgn0003353 Length:855 Species:Drosophila melanogaster
Sequence 2:XP_017950934.1 Gene:cnga1 / 100491997 XenbaseID:XB-GENE-950954 Length:708 Species:Xenopus tropicalis


Alignment Length:814 Identity:176/814 - (21%)
Similarity:322/814 - (39%) Gaps:235/814 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 IRKLDKIVQQCE----LYMSNNNINDNAAKKPPVKEFKRNCPAKSNKFVERELFSLMCNLNKIEK 72
            |:.:|:::::.|    .::|.||                |.|..|......:.:|:..:.|::. 
 Frog    19 IQDMDEVLERMENGECRFLSKNN----------------NKPCSSQSMESPKCYSIYSSKNRVH- 66

  Fly    73 KQVFVSDILINASMFDDKKESLARFPKNVSDHNTLVYHKFLRTRPTNDDEALKLKAGGKSKERPG 137
                    .:.|::..|::.|.|.     :|:||        ....|.:|..|.|   |.||:.|
 Frog    67 --------AVTATLHRDQQLSGAN-----ADYNT--------NNSNNKEEEEKKK---KKKEKKG 107

  Fly   138 TKITADCFFSPLLFKINNKRECLKKVKPMKGENAVETNGIPLESKPSQHKKQKSFKKCIKCDKKK 202
                                                         .|.|||:|...|..|.||:|
 Frog   108 ---------------------------------------------KSDHKKEKKKDKEKKKDKEK 127

  Fly   203 LYIKNYQVSARRECDLLCSYDPLRKNNADLFQTHKGTSYECMFKNLKYNQAEKPTDNVMGNSYDD 267
                     ..:|           ||        |..:.|...|..:..:|||            
 Frog   128 ---------GEKE-----------KN--------KDNAKEEKEKEKEKGKAEK------------ 152

  Fly   268 MLDKEALLGSKSEPKGQDPNDMITSLGGNILLDQKLQNNYYHKWTLLHYSPFKAVWDWIILILVM 332
              :||.....:.|.|.:|  ..:....||:         ||:             |.:.|.:.||
 Frog   153 --EKEKEKEKEKEIKKKD--IFVIDPSGNL---------YYN-------------WLFCITMPVM 191

  Fly   333 YTAIFTPYVAAFLLGE--QDYQRRNSKYINSDPIVIIDLIVDVTFIVDIIINFRTTFVNS----Q 391
            |.  :|..:|.....|  |||         .:....:|.:.|..:|.|:.:..||.::..    :
 Frog   192 YN--WTMIIARACFDELQQDY---------LELWFFLDYMSDAIYIADMFVRTRTGYLEQGLLVR 245

  Fly   392 DEVVSHPGRIAVHY-LSGWFLIDLVAAVPFDLLLV--GSDTDETTTLIGLLKTARLLRLVRVARK 453
            |||     ::...| ::..|.:|:::.:|.|:|.:  |.:..|          .||.:|:||||.
 Frog   246 DEV-----KLRDKYKMTMQFKLDVLSIIPTDILYLQFGLNYPE----------LRLNKLLRVARM 295

  Fly   454 IDRYSE----------YGAAVLILLMATFILIAHWLACIWYAIGNAEKSIASKNIGWLNSLAYDI 508
            .:.:..          :..:.||:.:   ::|.||.||::|:|        ||.||:       .
 Frog   296 FEFFQRTETRTNYPNIFRISNLIMYI---VIIIHWNACVYYSI--------SKAIGF-------G 342

  Fly   509 QEPYFDNRTGGPS---IKSRYITALYFTFTSLTSVGFGNVAPNTDAEKAFTICVMLVGSLMYASI 570
            ::.:....|..|.   :..:|:.:||::..:||::| ....|..|:|..|.:...|||.|::|:|
 Frog   343 EDTWVYPNTSHPEYGRLARKYVYSLYWSTLTLTTIG-ETPPPVQDSEFWFVVADFLVGVLIFATI 406

  Fly   571 FGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSLLKGF 635
            .|||.::|..:.:..|.:..::..:::::.|.::...|.:|:.::|.:.||....:|...:||..
 Frog   407 VGNVGSMISNMNAARAEFQGRIDAIKQYMHFRKVSKDLEKRVIKWFDYLWTNKKAVDEREVLKYL 471

  Fly   636 PECLQADICLHLNRKLLTTCAAFSEASPGCLRAFSLKFKTTHAPPGDILVHRGDVLTSLYFIARG 700
            |:.|:|:|.::::...|.....|::...|.|....||.:.....|||.:..:||:...:|.|..|
 Frog   472 PDKLRAEIAINVHLDTLKKVRIFADCEAGLLIELVLKLQPQVYSPGDYICRKGDIGREMYIIKEG 536

  Fly   701 SIEIQRAGNI---VVLGKNDIFGENPCIYPTVGKS----NGVVRALTYCDIHKLHRDDLLDVLDS 758
            .:.:.....|   |||.....|||...:.....|:    ...::::.|.|:..|.:|||::.|..
 Frog   537 KLAVVADDGITQFVVLSDGSYFGEISILNIKGSKAGNRRTANIKSIGYSDLFCLSKDDLMEALTE 601

  Fly   759 YPE---FLESFVSNLVITYNMRDDE--HSGVDIK 787
            ||:   .||.....:::...:.|.:  :||.|.|
 Frog   602 YPDAKAMLEEKGRQILMKDGLLDLDIANSGADPK 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seiNP_001286814.1 Ion_trans 360..583 CDD:278921 59/242 (24%)
Ion_trans_2 <526..580 CDD:285168 20/53 (38%)
CAP_ED 657..767 CDD:237999 32/119 (27%)
Crp 666..>766 CDD:223736 30/109 (28%)
cnga1XP_017950934.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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