DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sei and kcnh5

DIOPT Version :9

Sequence 1:NP_001286814.1 Gene:sei / 37843 FlyBaseID:FBgn0003353 Length:855 Species:Drosophila melanogaster
Sequence 2:XP_012823505.2 Gene:kcnh5 / 100151738 XenbaseID:XB-GENE-1013572 Length:1000 Species:Xenopus tropicalis


Alignment Length:564 Identity:231/564 - (40%)
Similarity:340/564 - (60%) Gaps:33/564 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 ITSLGGNILLDQKLQNNYYHKWTLLHYSPFKAVWDWIILILVMYTAIFTPYVAAFLLGEQDYQRR 354
            :..||.:||...|.:........:|||..||..|||:||||..||||..||..:|...:      
 Frog   199 VLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVSFKTKQ------ 257

  Fly   355 NSKYINSDPIVIIDLIVDVTFIVDIIINFRTTFVNSQDEVVSHPGRIAVHYLSGWFLIDLVAAVP 419
                 |:...:::|.:|||.|:|||::||.||||....||:|.|..|.::||..||:|||::.:|
 Frog   258 -----NNIAWLVLDSVVDVIFLVDIVLNFHTTFVGPGGEVISDPKLIRMNYLKTWFVIDLLSCLP 317

  Fly   420 FDLLLVGSDTDE-TTTLIGLLKTARLLRLVRVARKIDRYSEYGAAVLILLMATFILIAHWLACIW 483
            :|::....:.|| .::|...||..|||||.|||||:|.|.|||||||:||:..|.|:||||||||
 Frog   318 YDIINAFENVDEGMSSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVFGLVAHWLACIW 382

  Fly   484 YAIGN----AEKSIASKNIGWLNSLAYDIQEPYFDNRT------GGPSIKSRYITALYFTFTSLT 538
            |:||:    .|.:...|...||..|...|..||..|.:      ||||..|.|:::||||.||||
 Frog   383 YSIGDYEVIDEVTNTIKKDSWLYQLGLSIGTPYRYNASGSGQWEGGPSKDSLYVSSLYFTMTSLT 447

  Fly   539 SVGFGNVAPNTDAEKAFTICVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQ 603
            ::||||:||.||.||.|::.:|:||||:||:|||||:.|.|::|:.|.|||..:..||:|::.:|
 Frog   448 TIGFGNIAPTTDGEKIFSVAMMMVGSLLYATIFGNVTTIFQQMYANTNRYHEVLNNVRDFLKLYQ 512

  Fly   604 IPNPLRQRLEEYFQHAWTYTNGIDMNSLLKGFPECLQADICLHLNRKLLTTCAAFSEASPGCLRA 668
            :|..|.:|:.:|....|:.:.|||...:|...|:.::||||:|||||:.....||..||.||||:
 Frog   513 VPKGLSERVMDYIVSTWSMSKGIDTEKVLGICPKDMRADICVHLNRKVFNEHPAFRLASDGCLRS 577

  Fly   669 FSLKFKTTHAPPGDILVHRGDVLTSLYFIARGSIE-IQRAGNIVVLGKNDIFGENPCIYPTVGKS 732
            .:::|:|.|..|||::.|.|:.:.:|.|:..||:| ||....:.:|||.|:||:......|:..:
 Frog   578 LAVEFQTIHCAPGDLIYHAGESVDALCFVVSGSLEVIQDEEVVAILGKGDVFGDVFWKETTLAHA 642

  Fly   733 NGVVRALTYCDIHKLHRDDLLDVLDSYPEFLESFVSNLVITYNMRD----DEHSGVDIKHRYLRA 793
            ...||||||||:|.:.|:.||.|||.|..|..||..||.:|.|:|.    .:.|.|..:....:.
 Frog   643 CANVRALTYCDLHIIKREALLKVLDFYTAFANSFSRNLTLTCNLRKRIVFRKISDVKKEEEERQR 707

  Fly   794 KSSDKMRSSPDIPSIRIVGLRYKKQNVNTSVHKVKNDNSRDLNI 837
            :.::...|.|....:|.:..::|:|.      :::|..|.:.::
 Frog   708 QKNEVTLSIPVDHPVRKLFQKFKQQK------ELRNQGSTNSDL 745

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seiNP_001286814.1 Ion_trans 360..583 CDD:278921 116/233 (50%)
Ion_trans_2 <526..580 CDD:285168 33/53 (62%)
CAP_ED 657..767 CDD:237999 48/110 (44%)
Crp 666..>766 CDD:223736 41/100 (41%)
kcnh5XP_012823505.2 PAS_9 42..135 CDD:404329
PLN03192 232..>632 CDD:215625 187/410 (46%)
Crp 560..741 CDD:223736 62/186 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D258139at33208
OrthoFinder 1 1.000 - - FOG0000148
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X71
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.