DRSC/TRiP Functional Genomics Resources

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Protein Alignment gammaSnap1 and Napg

DIOPT Version :9

Sequence 1:NP_477469.1 Gene:gammaSnap1 / 37842 FlyBaseID:FBgn0028552 Length:302 Species:Drosophila melanogaster
Sequence 2:XP_006254891.1 Gene:Napg / 307382 RGDID:1310109 Length:312 Species:Rattus norvegicus


Alignment Length:315 Identity:119/315 - (37%)
Similarity:190/315 - (60%) Gaps:19/315 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IAAKKIAEAEDLVKQAEKSLKLSMLKWVPDYDSAADEYSKAATAYRIAKSYDKSKECFLKAIDAY 68
            :||:||.|..:.:.:|||.||...|||.|||||||.||.|||.|::.||.::::|:..|:...|:
  Rat     1 MAAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAH 65

  Fly    69 KNNKSWFHAAKAYEQIILLSKDADKLHEVEEYANKSASLYQQHGSPEAAASALDKAAKLTESKHP 133
            ::|::.|||||||||..::.|:..||.|..:...|::.:|.::|:|:.||.||::|.||.|:..|
  Rat    66 ESNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDP 130

  Fly   134 DMALRFYQHALEVIMIEDSVRQAAEYASKVSRILVKLRRYDEATNALKKEISLNQQTESYGQIGR 198
            :.|::.||....|...|:.:|||.|...|.||:||:.||:|||..:::||.::.::.|:|....:
  Rat   131 EKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTCYK 195

  Fly   199 LVVALVMVQLARGDSVEAEKTFREWGNCCEP-----EEVSTLQTLLQAFDDEDPELAARMLASPF 258
            ..:|.|:|.|.|.|.|.||:..||  :...|     |:.:.|:.||:.:|.:|.:..:.:..||.
  Rat   196 KTIAQVLVHLHRNDYVAAERCVRE--SYSIPGFNGSEDCAALEQLLEGYDQQDQDQVSEVCNSPL 258

  Fly   259 IRHMDVEYAILSKNIPLPQGIQMEKK-----------AGDTAAETNDAEDEGGLC 302
            .::||.:||.|..::.:|.| .::||           |...|||..:.|..||||
  Rat   259 FKYMDNDYAKLGLSLVVPGG-GIKKKSPATPQAKPEGAAGAAAEEEEDEYSGGLC 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gammaSnap1NP_477469.1 SNAP 11..248 CDD:305195 95/241 (39%)
TPR repeat 33..70 CDD:276937 17/36 (47%)
TPR repeat 74..111 CDD:276937 15/36 (42%)
TPR repeat 114..149 CDD:276937 14/34 (41%)
TPR repeat 153..187 CDD:276937 16/33 (48%)
NapgXP_006254891.1 SNAP 8..278 CDD:276937 103/271 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353328
Domainoid 1 1.000 178 1.000 Domainoid score I3462
eggNOG 1 0.900 - - E1_KOG1585
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 209 1.000 Inparanoid score I3604
OMA 1 1.010 - - QHG55184
OrthoDB 1 1.010 - - D1540214at2759
OrthoFinder 1 1.000 - - FOG0003744
OrthoInspector 1 1.000 - - otm44614
orthoMCL 1 0.900 - - OOG6_103437
Panther 1 1.100 - - LDO PTHR13768
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4180
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.810

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