DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MAN1 and lem-2

DIOPT Version :10

Sequence 1:NP_611873.1 Gene:MAN1 / 37838 FlyBaseID:FBgn0034962 Length:650 Species:Drosophila melanogaster
Sequence 2:NP_496944.1 Gene:lem-2 / 175058 WormBaseID:WBGene00002275 Length:500 Species:Caenorhabditis elegans


Alignment Length:586 Identity:124/586 - (21%)
Similarity:198/586 - (33%) Gaps:156/586 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LNSLSDKELHRKLIQSGFPSTPVTETTRAVLIEKLRK-----------HTRADKLKKRSNKYVLY 59
            :..:||.||..:|...|....|||.|||::..:||:|           .|.|....|.:.|....
 Worm     4 VEKMSDAELRAELNVRGANVGPVTGTTRSLYEKKLKKLLSGGAKTPARPTVAKPAPKPTPKSAPA 68

  Fly    60 SKEQQESPPFPQYHQYHAPQPPQNYANGLDNNNDLDQTGGSSAYNRSLDESDSSPLQLSASKMYA 124
            .| ..:|||..:.....|.....:..|...|.:::::...|....|..|:.|        .::.:
 Worm    69 PK-SPKSPPARRSIPRAAATAANSTINSTFNRSEIEEMSDSDDDMRDDDDDD--------EEILS 124

  Fly   125 PPPVVASNYDGDCSPHSLGLN-------GKYLQPCSMPYAIDTSNNYGKPSGKAKLSDGGVVNRL 182
            |....:|....:.:..|:|..       .|.|.|...|..: ..|.....|..:|          
 Worm   125 PKSKQSSFRSANSTASSVGRGRPVSSTPNKRLSPVYKPSPV-PKNTPRTTSSSSK---------- 178

  Fly   183 LSFRDTTIQRKFNYPTGQASRIPLRKERLTRF--ALSDL-KSFIRNPDIRPYVIPRVLISLFLIF 244
                 |||    |..|   :|||....|:|..  .::|. .||......||...|          
 Worm   179 -----TTI----NTTT---TRIPSTPRRITSVPGLITDFTPSFSTFGSDRPGATP---------- 221

  Fly   245 LTIITVLYVGKRFEQSPIDKAALKYTLCNPN---------DMQMISEKVNCIEKDSLRGALDMSE 300
                    ..|....|.:.|  :.:.|.|..         :.|..|..:...|:.|.||.:..:.
 Worm   222 --------PRKSIYTSKVSK--VLHDLGNTTGEEDDDDEFEGQETSRIIYKTEEPSRRGIVKNAW 276

  Fly   301 ELFRHLNERARLHHCKDANLSPA----LEIGEFVREMVSNPKTHRGNL------HSNLMAAKYLI 355
            ...        |.:..||:.:|.    |..|.....:..||:|.:..:      :..:..|.|:|
 Worm   277 NKV--------LGYGFDASKNPGDSYDLRAGASRIRVQKNPRTGKVTVKQTNIFNEAIYFALYVI 333

  Fly   356 ---------------TENPQWSIQVVDSTKHLGQTSHFELSEPNLPLKCIVLKKVTR----FFTV 401
                           |..|    :..|.:.:.|                 |||...|    ||..
 Worm   334 LILFVVLGIAYALTTTHRP----KTADFSGYWG-----------------VLKAAGRDSLNFFYN 377

  Fly   402 IGALLLIVAGFLIVYVAVVIY------RVKQKEALLAVDQFQKDIINELIYLSSQSESPEVVINQ 460
            ...|.::..|..:|..|.:.:      ..|::|.....:..::  |.|||..||....|.|....
 Worm   378 YAILPVVSLGIFVVLGAGIYFGHRKYKEAKEQEEAKLYELIER--ITELIRESSIDGDPYVSQPH 440

  Fly   461 LQE-KFLPAKKRSKLLSSWNKALKQLEKNDSRVLFG-MVNRDGKAMRTIAWNRNVDKKDVGLVKK 523
            ::: .|.|||:||..|:.|.:|:|.::.|:|||... :|...|.......|..|..:      |:
 Worm   441 VRDVLFPPAKRRSAELARWEQAVKFIDTNESRVATDVLVLPSGNECAVWKWIGNQSQ------KR 499

  Fly   524 W 524
            |
 Worm   500 W 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MAN1NP_611873.1 LEM 4..47 CDD:128813 16/51 (31%)
RRM_Man1 542..631 CDD:409728
lem-2NP_496944.1 LEM_LAP2_LEMD1 3..>35 CDD:240587 12/30 (40%)
MSC <385..493 CDD:430586 30/109 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.