DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chi and LDB1

DIOPT Version :9

Sequence 1:NP_726403.2 Gene:Chi / 37837 FlyBaseID:FBgn0013764 Length:596 Species:Drosophila melanogaster
Sequence 2:NP_001106878.1 Gene:LDB1 / 8861 HGNCID:6532 Length:411 Species:Homo sapiens


Alignment Length:397 Identity:237/397 - (59%)
Similarity:291/397 - (73%) Gaps:21/397 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 PFNSGQAGHFSSPTVFSVGGQFNPMPPASPFGHGGNHPMMGGPQQMERIDQGFRRHNSYFSHTEH 237
            |..|.::....||.....|..|.|..|.:..........|..|..:|   .|..||..|.:.|::
Human     8 PGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLE---PGIGRHTPYGNQTDY 69

  Fly   238 RVFELNKRLQQRNEESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRYTIGRTLIPRFFRSIYEG 302
            |:||||||||...||.||.|||:||||||||||.|||.|||||||||||||||||||:||||:||
Human    70 RIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEG 134

  Fly   303 GVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVCADARLILEFMYDDYMRIKSWHM 367
            |.::||:.|||.||:||:..::|||||.:::||||||.||:||.:.||.||||:||.||||:||.
Human   135 GATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHF 199

  Fly   368 TIKGHRELIPRSVIGTSLPPDPMLLDQITKNITRAGITNSTLNYLRLCVILEPMQELMSRHKAYA 432
            :|:.||||||||::... ..||.:|||::|||||.|::||||||||||||||||||||||||.|:
Human   200 SIRQHRELIPRSILAMH-AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 263

  Fly   433 LSPRDCLKTTLFQKWQRMVAPPGKKDPQRPPNKRRKRKGS-----NSGGGNNSNTPPVTNQKRSP 492
            |||||||||.||||||||||||.:...|: |:||||||.|     :|||||.:|:   .::|:||
Human   264 LSPRDCLKTCLFQKWQRMVAPPAEPTRQQ-PSKRRKRKMSGGSTMSSGGGNTNNS---NSKKKSP 324

  Fly   493 SGPSFSLSSQ--DVMVVGEPTLMGGEFGEEDERLITRLENTQYDGTNAVEHDNHTGFGHADSPIS 555
            :. :|:||||  ||||||||||||||||:|||||||||||||:|..|.:  |:...|.  :||..
Human   325 AS-TFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGI--DDEDSFN--NSPAL 384

  Fly   556 GSN-PWS 561
            |:| ||:
Human   385 GANSPWN 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChiNP_726403.2 LIM_bind 238..440 CDD:280051 144/201 (72%)
LDB1NP_001106878.1 LIM_bind 70..271 CDD:396393 144/201 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 283..330 22/51 (43%)
LID 336..364 CDD:407766 26/27 (96%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 367..411 10/29 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165146279
Domainoid 1 1.000 243 1.000 Domainoid score I2214
eggNOG 1 0.900 - - E1_KOG2181
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 460 1.000 Inparanoid score I1571
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002757
OrthoInspector 1 1.000 - - otm42033
orthoMCL 1 0.900 - - OOG6_105360
Panther 1 1.100 - - O PTHR10378
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3240
SonicParanoid 1 1.000 - - X1842
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.780

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