DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chi and SLK1

DIOPT Version :9

Sequence 1:NP_726403.2 Gene:Chi / 37837 FlyBaseID:FBgn0013764 Length:596 Species:Drosophila melanogaster
Sequence 2:NP_001320064.1 Gene:SLK1 / 828657 AraportID:AT4G25520 Length:748 Species:Arabidopsis thaliana


Alignment Length:445 Identity:79/445 - (17%)
Similarity:140/445 - (31%) Gaps:141/445 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 QQMERIDQGFRRHNSYFSHTEHRVFELN----------KRLQQRNEESDNCWWDSFTTEFFEDDA 270
            ||.:::.|..::..:.......|.:|:.          ..||||..|:...:|..|..|:|...|
plant   160 QQQQQLRQQLQQQGTQQIPPNVRPYEVGVCARKLMMYLYHLQQRPAENCITYWRKFVAEYFSPRA 224

  Fly   271 RLTILFCLEDGPKRYTIGR--------------------------TLIPRFFRSIYEGGVSDLYF 309
            :..:.....:....:.:|.                          .::.|.....:..|:.|...
plant   225 KQRLCLSQYESAGHHALGMFPQAAPDMWQCDLCGTKSGKGFEATFDVLARLIEIKFASGIIDELL 289

  Fly   310 QLKHAKES-FHNTSITLDCDQCTVITQHGKPFFTKVCADARLILEFMYDDYMRIKSWHMTIKGHR 373
            .|.|.:|: |.|..:.|:..:....|.|.:   .:|..:..|.:.|..|  ::|.||....:.|.
plant   290 YLDHPRENRFPNGLMMLEYRKAVQETVHEQ---FRVVREGHLRIIFSQD--LKILSWEFCARRHE 349

  Fly   374 ELIPRSVIGTSLPPDPMLLDQITKNITRAGI---------TNST--------------------L 409
            ||:.|.:|...:.....:..:....|:.:|.         :||.                    |
plant   350 ELLLRRLIAPQVNQLLQVAQKCQSTISESGSEGVSQQDLQSNSNMVLGAGRQLAKFMELQSLNDL 414

  Fly   410 NY-------LRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQ----KWQRMVAPPGKKDPQRPP 463
            .|       |::..:::.|::||:......:.|.:.||..|.|    |.|               
plant   415 GYPKRYIRTLQISEVVKSMKDLMNFTGEQKIGPIEGLKRLLEQTVTVKLQ--------------- 464

  Fly   464 NKRRKRKGSNSGGGNNSNTPPVTNQKRSPSGPSFSLSSQDVMVVGEPTLMGGEFGEEDERLITRL 528
              ::|.:.....|.|.:...||..|                ||:...|:.|.             
plant   465 --KQKMQEMEQFGNNGAINGPVQAQ----------------MVLTSGTMNGS------------- 498

  Fly   529 ENTQYDGTNAVEHDNHTGFGHADSPISGSNPWSIDRAGAIPASPGNGAAPQNNAN 583
                 .|.|...|....|.|....|..|.   .:..:|.:     :||...||:|
plant   499 -----TGNNTNNHHQIVGRGAMSGPAEGQ---MVISSGTV-----SGATANNNSN 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChiNP_726403.2 LIM_bind 238..440 CDD:280051 47/274 (17%)
SLK1NP_001320064.1 LIM_bind 192..452 CDD:396393 45/264 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10378
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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