DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chi and Ldb1

DIOPT Version :10

Sequence 1:NP_726403.2 Gene:Chi / 37837 FlyBaseID:FBgn0013764 Length:596 Species:Drosophila melanogaster
Sequence 2:NP_001424981.1 Gene:Ldb1 / 309447 RGDID:1310359 Length:411 Species:Rattus norvegicus


Alignment Length:397 Identity:237/397 - (59%)
Similarity:291/397 - (73%) Gaps:21/397 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 PFNSGQAGHFSSPTVFSVGGQFNPMPPASPFGHGGNHPMMGGPQQMERIDQGFRRHNSYFSHTEH 237
            |..|.::....||.....|..|.|..|.:..........|..|..:|   .|..||..|.:.|::
  Rat     8 PGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLE---PGIGRHTPYGNQTDY 69

  Fly   238 RVFELNKRLQQRNEESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRYTIGRTLIPRFFRSIYEG 302
            |:||||||||...||.||.|||:||||||||||.|||.|||||||||||||||||||:||||:||
  Rat    70 RIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEG 134

  Fly   303 GVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTKVCADARLILEFMYDDYMRIKSWHM 367
            |.::||:.|||.||:||:..::|||||.:::||||||.||:||.:.||.||||:||.||||:||.
  Rat   135 GATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHF 199

  Fly   368 TIKGHRELIPRSVIGTSLPPDPMLLDQITKNITRAGITNSTLNYLRLCVILEPMQELMSRHKAYA 432
            :|:.||||||||::... ..||.:|||::|||||.|::||||||||||||||||||||||||.|:
  Rat   200 SIRQHRELIPRSILAMH-AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 263

  Fly   433 LSPRDCLKTTLFQKWQRMVAPPGKKDPQRPPNKRRKRKGS-----NSGGGNNSNTPPVTNQKRSP 492
            |||||||||.||||||||||||.:...|: |:||||||.|     :|||||.:|:   .::|:||
  Rat   264 LSPRDCLKTCLFQKWQRMVAPPAEPARQQ-PSKRRKRKMSGGSTMSSGGGNTNNS---NSKKKSP 324

  Fly   493 SGPSFSLSSQ--DVMVVGEPTLMGGEFGEEDERLITRLENTQYDGTNAVEHDNHTGFGHADSPIS 555
            :. :|:||||  ||||||||||||||||:|||||||||||||:|..|.:  |:...|.  :||..
  Rat   325 AS-TFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGI--DDEDSFN--NSPAL 384

  Fly   556 GSN-PWS 561
            |:| ||:
  Rat   385 GANSPWN 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChiNP_726403.2 PPE <49..214 CDD:444372 9/40 (23%)
LIM_bind 238..440 CDD:426444 144/201 (72%)
LID 503..531 CDD:465564 26/27 (96%)
Ldb1NP_001424981.1 None

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