DRSC/TRiP Functional Genomics Resources

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Protein Alignment Phm and Pal2

DIOPT Version :9

Sequence 1:NP_477225.1 Gene:Phm / 37823 FlyBaseID:FBgn0283509 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001286776.1 Gene:Pal2 / 37746 FlyBaseID:FBgn0262728 Length:406 Species:Drosophila melanogaster


Alignment Length:362 Identity:65/362 - (17%)
Similarity:113/362 - (31%) Gaps:133/362 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 QQNLESNSATGATASFPFLMPNVSPQTPDLYLCTPIKVDP---------------------TTTY 80
            |::.::.....|:...|.|:.|...:.......|.:.|||                     :..|
  Fly    83 QRSYDNVPLPAASVPTPVLVENWPTEQHSFGQVTAVAVDPQGSPVVFHRAERYWDVNTFNESNIY 147

  Fly    81 YIVGFNPNATMNTAHHMLLYGCGEPGTSKTTWNCGEMNRASQEESASPCGPHSNSQIVYA--WAR 143
            |::.:.| ...||.:.:    ..:.|..|:.|.......           ||..:..::.  |..
  Fly   148 YLIEYGP-IKENTIYVL----DAKTGAIKSGWGSNMFYM-----------PHGLTIDLHGNYWIT 196

  Fly   144 D------------AQKLNLPEGVGFKVGKNSPIKYLV--LQVHYAHIDKF--KDGSTDD------ 186
            |            :.|..|..|..|:.|  |.:|:|.  ..:..|...:|  .||..:.      
  Fly   197 DVAMHQAFKFKPFSNKPLLTIGKRFRPG--SSVKHLCKPTSIAVATTGEFFIADGYCNSRILKFN 259

  Fly   187 -SGVFLDYTEEPRKKLAGTLLLGTDGQIPAMKT--EHLETACEVNEQ--KVLHPFAYRVHTHG-- 244
             :|..|....:|.:.|:        .|:|...|  |||:..|..:.:  :|:.|.|..:.:||  
  Fly   260 AAGKLLRTIPQPPEFLS--------LQVPHAITLLEHLDLLCIADRENMRVVCPKAGLISSHGEG 316

  Fly   245 ----------LGKV---------------------VSGYRVRTNSD------GEQEWLQLGKRDP 272
                      ||:|                     |.|:.:...|:      ||           
  Fly   317 EPAATIQEPDLGRVFGVASFGDIVFAVNGPTSMLPVRGFTIDPRSETIIGHWGE----------- 370

  Fly   273 LTPQMFYNTSNTDPIIEGDKIAVRCTMQSTRHRTTKI 309
                 |.|..:....:.|..:.|  |...|.|:|.::
  Fly   371 -----FKNPHSMAVSVNGSALYV--TEIGTNHQTNRV 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PhmNP_477225.1 Cu2_monooxygen 51..179 CDD:279429 28/164 (17%)
Cu2_monoox_C 201..350 CDD:281675 29/152 (19%)
Pal2NP_001286776.1 NHL_PAL_like 102..404 CDD:271328 61/343 (18%)
NHL repeat 115..176 CDD:271328 12/65 (18%)
NHL repeat 182..222 CDD:271328 7/39 (18%)
NHL repeat 233..270 CDD:271328 6/36 (17%)
NHL repeat 277..321 CDD:271328 12/43 (28%)
NHL repeat 329..369 CDD:271328 4/39 (10%)
NHL repeat 372..403 CDD:271328 7/31 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45455378
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3567
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.960964 Normalized mean entropy S6078
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002923
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10680
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2722
SonicParanoid 00.000 Not matched by this tool.
76.820

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