DRSC/TRiP Functional Genomics Resources

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Protein Alignment Phm and pamn-1

DIOPT Version :9

Sequence 1:NP_477225.1 Gene:Phm / 37823 FlyBaseID:FBgn0283509 Length:365 Species:Drosophila melanogaster
Sequence 2:NP_001367424.1 Gene:pamn-1 / 266833 WormBaseID:WBGene00020556 Length:663 Species:Caenorhabditis elegans


Alignment Length:334 Identity:114/334 - (34%)
Similarity:156/334 - (46%) Gaps:46/334 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 NSATGATA------SFPFLMPNVSPQTPDLYLCTPIKVDPTTTYYIVGFNPNATMNTAHHMLLYG 101
            ::||..||      .|...|...|||..|.|:...|:..|.   |:|.|.|.|..:..|||||||
 Worm    20 SAATVRTAKNDDIQKFTIQMIGYSPQKTDDYVAVSIEATPG---YVVAFEPMAHADRVHHMLLYG 81

  Fly   102 CGEPGTSKTTWNCGEMNRASQEESASPCGPHSNSQIVYAWARDAQKLNLPEGVGFKVG-KNSPIK 165
            |..|.:.:..|           .....||....|.|:|||||:|..|.||:.|.|.|| :...||
 Worm    82 CTMPASEQGFW-----------RGMETCGWGGGSYILYAWARNAPNLVLPKDVAFSVGHEQDGIK 135

  Fly   166 YLVLQVHYAHIDKFKDGSTDDSGVFLDYTEEPRKKLAGTLLL--GT--DGQIPAMKTEHLETACE 226
            |.|||||||  ..|.....|.|||.:..:::....||..:|.  ||  ..|:||.:.   ...|.
 Worm   136 YFVLQVHYA--QPFAGEVHDFSGVTMHISQKKPMNLAAVMLFVSGTPIPPQLPAFQN---NITCM 195

  Fly   227 VNEQKVLHPFAYRVHTHGLGKVVSGYRVRTNSDGEQEWLQLGKRDPLTPQMFYNTSNTDPIIEGD 291
            ......:||||:|.|||.:|::||.:   ...||  .|.::|||:|..||:|....:...|..||
 Worm   196 FESSTPIHPFAFRTHTHAMGRLVSAF---FKHDG--HWTKIGKRNPQWPQLFEGIPSKLMIGSGD 255

  Fly   292 KIAVRCTMQS-TRHRTTKIGPTNEDEMCNFYLMYYVDHGETLNMKFCFSQGA------PYYFWSN 349
            :::..|...| .::||..:|....|||||||:|::.|    ..:...:.|||      |......
 Worm   256 QMSASCRFDSMDKNRTVNMGAMGVDEMCNFYMMFHYD----AKLDNPYPQGAICAKDYPSKMIDY 316

  Fly   350 PDSGLHNIP 358
            |..|...:|
 Worm   317 PKDGFELLP 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PhmNP_477225.1 Cu2_monooxygen 51..179 CDD:279429 51/128 (40%)
Cu2_monoox_C 201..350 CDD:281675 51/159 (32%)
pamn-1NP_001367424.1 Cu2_monooxygen <61..146 CDD:395859 42/97 (43%)
Cu2_monoox_C 168..289 CDD:397669 45/128 (35%)
NHL_PAL_like 355..656 CDD:271328
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3567
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002923
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.770

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