DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and PDLIM7

DIOPT Version :9

Sequence 1:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_005442.2 Gene:PDLIM7 / 9260 HGNCID:22958 Length:457 Species:Homo sapiens


Alignment Length:99 Identity:33/99 - (33%)
Similarity:42/99 - (42%) Gaps:12/99 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VPATTPARPATITIQRRHPAPKADSTPHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAITHP 88
            ||.|....||:.|.|...|.|.|.| |.:.||:  :..||.:...||.:|.......||.|.  |
Human   193 VPRTEAPAPASSTPQEPWPGPTAPS-PTSRPPW--AVDPAFAERYAPDKTSTVLTRHSQPAT--P 252

  Fly    89 AAVASPSAPVAAAAPKTP-------KTPEPRSTH 115
            ..:.|.::.|.|||...|       |||.....|
Human   253 TPLQSRTSIVQAAAGGVPGGGSNNGKTPVCHQCH 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684
PDLIM7NP_005442.2 PDZ_signaling 5..79 CDD:238492
Atrophin-1 <81..254 CDD:331285 23/65 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 82..142
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 176..226 14/35 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..258 5/20 (25%)
LIM1_Enigma 282..333 CDD:188836 1/5 (20%)
LIM2_Enigma 341..392 CDD:188840
LIM3_Enigma 400..454 CDD:188842
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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