DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and pxnb

DIOPT Version :9

Sequence 1:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:XP_021334029.1 Gene:pxnb / 565130 ZFINID:ZDB-GENE-130530-697 Length:1197 Species:Danio rerio


Alignment Length:632 Identity:132/632 - (20%)
Similarity:196/632 - (31%) Gaps:191/632 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PARPATITIQRRHPAPK---ADSTPHTLP----PFSPSPS------------------------- 61
            |....|.|....||.|.   :.|...|||    .|||.||                         
Zfish   311 PLFEQTTTTAEIHPPPTTTVSKSLSPTLPAESRQFSPGPSSFELHIVEDSGEPGAVPLPSNGVFK 375

  Fly    62 --------PASSPSPAPAQTPGAQKTQSQAAITHPAAVASPSAPVAAAAPKT-PKTPEPRSTHTH 117
                    |||||..:||...|.     .:||...|::.|..........:| |.|..||     
Zfish   376 SYSRLSPPPASSPRFSPAPDLGL-----DSAIDVSASLLSSEVESLVVLSQTIPMTSAPR----- 430

  Fly   118 THTHSQHFSPPPRESEMDGERSPS----HSGHEMTLSMDGIDSSLVFGSARVPVNSSTPYSDATR 178
                .|:.||.       .|.|||    :||                      :||.:|     .
Zfish   431 ----GQYLSPV-------REGSPSAKLMNSG----------------------LNSYSP-----N 457

  Fly   179 TKKHSP-------------GHIKRPMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQLLSK 230
            ||..||             ..:..|.:..:..|:.|.:.: ...|.|..:.:.......:..|.|
Zfish   458 TKSPSPRSSPAISRVNERVSPLMTPASIDLYLSRPETKPL-SPVPSLPRSPLPAVSESSFLSLPK 521

  Fly   231 DDKQPYIIEAEKLRKLHMIEYPNYKYRPQKKQTRSP-GSLKPNQDADGCEARNDTTNNNNSLTTL 294
            ....|.||....  .|.:.:.|:.|   |:.....| .||||:.:....|...|     ::|..|
Zfish   522 ALSPPPIIPTSP--TLGVSKSPSPK---QESAYLEPVVSLKPHLEPPTYEPSLD-----DALDKL 576

  Fly   295 AINGTTTAGRKSKRSTSTCQSGSASKRLRNDSGDTSSKPKYEVKMESAEQLNSADIILPS----- 354
                  .|...|:....|..:.|||.:|       :|:.:.|:..||....:.:||...:     
Zfish   577 ------LAMSFSRPENETHITASASSQL-------TSEAQPEIYEESIVAADRSDIHPDTHTESE 628

  Fly   355 -ADNLISYQSSEYLPLSTLSNADCDEKLHSELSSGPLESRENLSEVVNRFLPLFLGGNEDSQLGV 418
             .|.|:..||.   ..|.|..||.:.|:..|...|.:......|.:.:...|....|..|:|:.:
Zfish   629 MGDGLLEDQSD---CRSDLDWADMELKMAYEGPDGSMTPMTEASWMDDSLTPSSCPGTPDAQMDL 690

  Fly   419 SSLTQSQHNQSDPTAGLMDNISDISPINDREELTEEVMRYLPYLEVNPSSDGLTLKVESSSLLGK 483
            ..|..         ||.||.||....|......|:|:....|...     |||..:.....:..|
Zfish   691 PMLHM---------AGTMDRISASGHIKSVIRRTKEIQNVHPMYR-----DGLIRRKMGPLIFHK 741

  Fly   484 PLNEPVFDSEDNIVND-------ANLHSASHQIPPYVPDSHDCFAEDC--------GGDSSSHQV 533
            .      :|:|.::.:       |....|..|.|      .|...|..        ..:..:..|
Zfish   742 S------NSQDRLIEELQGKLGIARKEKAKKQQP------DDWLTEGVIVMSNPKRSREDHNRDV 794

  Fly   534 EFEVVRPQTVTMTMTCTLPYGGPDAGHTTFQADDFNAIPSAAEDSEC 580
            :..::.|::........||...|.....          |..||:.:|
Zfish   795 DKIIIPPESPLPQRKMILPPQSPPMPRP----------PPPAEEPKC 831

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684 13/70 (19%)
pxnbXP_021334029.1 Paxillin 96..272 CDD:308898
Atrophin-1 <178..684 CDD:331285 98/447 (22%)
LIM1_Paxillin_like 964..1016 CDD:259830
LIM2_Paxillin_like 1023..1074 CDD:188723
LIM3_Paxillin_like 1082..1134 CDD:188724
LIM4_Paxillin 1141..1192 CDD:188795
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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