DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and sox13

DIOPT Version :9

Sequence 1:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:XP_012818604.1 Gene:sox13 / 549758 XenbaseID:XB-GENE-481889 Length:577 Species:Xenopus tropicalis


Alignment Length:414 Identity:109/414 - (26%)
Similarity:158/414 - (38%) Gaps:98/414 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 TTEPPLSLRPGTVPTVPATTPARPATITIQRRHPAPKADSTPH----TLPPFSPSPSPASSP--- 66
            |.:|.:||....:|..|...|......:..|...:.|...|..    |..|....|:..|||   
 Frog   225 TADPQMSLPIQPIPCKPVEYPMSLLHNSTTRGSVSAKRQETSQPLNLTAKPTDQVPNSRSSPKYR 289

  Fly    67 -SPAPAQTPGAQKTQSQAAITHPAAVASPSAPVAAAAPKTPKTPEP----RSTHTHTHTHSQHFS 126
             ||.     |:|...|..:.:.|.....|...:......|....|.    ...:|....|.|.:.
 Frog   290 MSPV-----GSQGGSSMDSASSPQKANLPLGFLGEGDAITKAIQEACQLLHGQNTSPEHHQQKYR 349

  Fly   127 PP-----PRESEMDGERSPSHSGHEMTL--SMDGIDSSLVFGSARVPVNSSTPYSDATRTKKHSP 184
            ..     |.:...|| .|..|: .|..|  :|| ||.|.  ||                      
 Frog   350 KELLDTLPEKEVQDG-ASLQHT-EESVLGCNMD-IDGSR--GS---------------------- 387

  Fly   185 GHIKRPMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQLLSKDDKQPYIIEAEKLRKLHMI 249
             ||||||||||||::.|||||.:..||:||:.|||.||.||:.:|..:||||..|..:|.:.|:.
 Frog   388 -HIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNAEKQPYYEEQARLSRQHLE 451

  Fly   250 EYPNYKYRPQKKQT--RSPGSLKPNQDADGCEARNDTTNNNNSLTTLAINGTTTAGRKSKRSTST 312
            .||:|||:|:.|:|  .....|:..:.....:.|...|.....:|::              ....
 Frog   452 RYPDYKYKPRPKRTCIVEGKRLRVGEYKALMKNRRQDTRQGYVITSI--------------GALQ 502

  Fly   313 C---QSGSASKRLRNDSGDTSSKPKYEVKMESAEQLNSADIILPSADN--------LISYQSSEY 366
            |   .||.:|:.|                :::..||.|:|...|...|        |:|::....
 Frog   503 CPPSPSGFSSQSL----------------LDNLSQLPSSDHYNPQDCNIQVVKSHLLVSHEPHGA 551

  Fly   367 LPLSTLSNADCDEKLHSELSSGPL 390
            :|   ::...|.:...|..|.|.|
 Frog   552 IP---MAKDICSDSEDSGKSDGEL 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684 40/70 (57%)
sox13XP_012818604.1 SOX-TCF_HMG-box 388..459 CDD:238684 40/70 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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