DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and pxna

DIOPT Version :9

Sequence 1:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_963882.1 Gene:pxna / 399546 ZFINID:ZDB-GENE-040105-1 Length:533 Species:Danio rerio


Alignment Length:422 Identity:73/422 - (17%)
Similarity:134/422 - (31%) Gaps:145/422 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 DSTPHTLPPFSPSPSPASSP----SPAPAQT---PGAQKTQSQAAITHPAAVASPSAPVAAAAPK 104
            :.||::.|..|.|....|||    || ||:|   ...:|.:|:    |.:..:..|||.::    
Zfish    27 EETPYSCPRGSDSYQDVSSPPRVISP-PAETLNGSWVEKPESK----HSSTQSFNSAPKSS---- 82

  Fly   105 TPKTPEPRSTHTHTHTHSQHFSPPPRE----------SEMDGERSPSHSGHEMTLSMDGIDSSLV 159
            :|:..:....|.::..:.|.....|..          ||:|          .:.|.::.:..|  
Zfish    83 SPRVSQSEEEHVYSFPNKQKSIESPTAVMNSSLGSNLSELD----------RLLLELNAVQHS-- 135

  Fly   160 FGSARVPVNSSTPYSDATRTKKH------------SPGHIKRPM-------------NAFMVWSQ 199
              :...|...:.|...|:.|:::            :|..|::|.             :...:.:|
Zfish   136 --TPSFPAEETYPPKPASNTQRYVPENGVSSVVKAAPPKIEKPKRNIPAKVIEEVRPSVESLLNQ 198

  Fly   200 MER-----------------RKICERTPDLHNAEISKELGRRWQLLSKDDKQPYIIEAEKLRKLH 247
            :|.                 |.:.|.||....|.||.....|              |.::|    
Zfish   199 LESSVPAAVPVSSVPMVSELRGVQEETPAQQQARISASSATR--------------ELDEL---- 245

  Fly   248 MIEYPNYKYRPQKKQTRSPGSLKPNQDADGCEARNDTTNNNNSLTTLAINGTTTAGRKSKRSTST 312
            |....::|             ::.|..|.|..:........|.|..:..:..:...|...::.:.
Zfish   246 MASLSDFK-------------VQSNIMAQGKSSPTSVPKQGNKLDNMLGSLQSDLNRLGVQTVAK 297

  Fly   313 CQSGSASKRLRNDSGDTSSK---PKYEVKMESAEQLNSADIILPSADNLISYQSSEYLPLSTLSN 374
            ...|:..|.:.........:   |::.|..:..|::.|.        |........|        
Zfish   298 GVCGACKKPIAGQVVTAMGRTWHPEHFVCTQCQEEIGSR--------NFFERDGQPY-------- 346

  Fly   375 ADCDEKLHSELS------SGPLESRENLSEVV 400
              |::..||..|      |||:     |.:||
Zfish   347 --CEKDYHSLFSPRCYYCSGPI-----LDKVV 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684 16/100 (16%)
pxnaNP_963882.1 Paxillin 54..229 CDD:281527 30/196 (15%)
LIM1_Paxillin_like 300..352 CDD:259830 9/69 (13%)
LIM2_Paxillin 359..410 CDD:188791 6/18 (33%)
LIM3_Paxillin 418..470 CDD:188793
LIM4_Paxillin 477..528 CDD:188795
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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