DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and Sox21a

DIOPT Version :9

Sequence 1:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster


Alignment Length:480 Identity:118/480 - (24%)
Similarity:169/480 - (35%) Gaps:160/480 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 SPSPASSPSPAPAQTPGAQKTQSQAAITHPAAVASPSAPVAAAAPKTPKTPEPRSTHTHTHTHSQ 123
            |.|..::|.|.|                 ||.:|   .|.||..|..||..:    |||.|.:|.
  Fly    59 SGSGNTTPPPMP-----------------PADLA---VPPAAPTPVAPKMHQ----HTHHHGNSH 99

  Fly   124 HFSPPPRESEMDGERSPSHSGHEMTLSMDGIDSSLVFGSARVPVNSSTPYSDATRTKKHSPGHIK 188
            |.:|....:...|..   |:.|:                                       |||
  Fly   100 HNAPTSHSNSNTGSH---HNSHD---------------------------------------HIK 122

  Fly   189 RPMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQLLSKDDKQPYIIEAEKLRKLHMIEYPN 253
            ||||||||||:.:|||:.:..|.:||:||||.||..|:||::..|:|:|.||::||.|||.|:|:
  Fly   123 RPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPD 187

  Fly   254 YKYRPQKKQTRSPGSLKPNQDADGCEARNDTTNNNNSLTTLAINGTTTAGRKSKRSTSTCQSGSA 318
            |||||::|......|..|.....|...              ..||...||.......|...|..:
  Fly   188 YKYRPRRKPKTLNKSPVPGGGGGGGGG--------------GANGGVNAGGAGNSGPSGPGSVGS 238

  Fly   319 SKRLRNDSGDTSSKPKYEVKMESAEQLNSADIILPSADNLISYQSSEYLPLSTLSNADCDEKLHS 383
            .|.:         :|:.....:|...|:......|       |||..:.|        .....|.
  Fly   239 PKDM---------QPQLSPLGQSLPHLHGHPHQSP-------YQSHPHHP--------HPHPHHV 279

  Fly   384 ELSSGPLESRENLSEVVNRFLPLFLGGNEDSQLGVSSLTQSQHNQSDPTAGLMDNISDISPINDR 448
            :|::..|.::......:...||..          .::.....|...|||..|           |.
  Fly   280 QLAAATLSAKYGFGSPLELSLPRL----------PNAFPGLAHYPLDPTLAL-----------DL 323

  Fly   449 EELTEEV--------MRYLPYLEVN-----PSSDGL------TLKVESSS---LLGKPLNEPVFD 491
            :...:.:        .||||.:...     |||.|.      .:|.|.||   ::....:.|   
  Fly   324 QARLQAMYAGSIYHPWRYLPLISPETPPSPPSSSGTGISSYGCVKSEKSSPNAVVASAASPP--- 385

  Fly   492 SEDNIVNDANLH-------SASHQI 509
               ||: ...|.       ||.|.:
  Fly   386 ---NIIXPTPLRFGAGTSSSAEHVV 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684 42/70 (60%)
Sox21aNP_001261827.1 SOX-TCF_HMG-box 120..191 CDD:238684 42/70 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447491
Domainoid 1 1.000 49 1.000 Domainoid score I4418
eggNOG 1 0.900 - - E1_KOG0527
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1275
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10270
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R685
SonicParanoid 00.000 Not matched by this tool.
87.820

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