DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and sox17b.1

DIOPT Version :9

Sequence 1:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_988849.1 Gene:sox17b.1 / 394440 XenbaseID:XB-GENE-484865 Length:376 Species:Xenopus tropicalis


Alignment Length:431 Identity:103/431 - (23%)
Similarity:167/431 - (38%) Gaps:137/431 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 GSARVPV--------NSSTPYSDATRTKKH---------SPGHIKRPMNAFMVWSQMERRKICER 208
            |:..||:        :..|.:.|| :|||.         :...|:|||||||||::.||:::.::
 Frog    16 GNCSVPIMMGQYEWTDPLTMFQDA-KTKKEAGSANSRGKAEARIRRPMNAFMVWAKDERKRLAQQ 79

  Fly   209 TPDLHNAEISKELGRRWQLLSKDDKQPYIIEAEKLRKLHMIEYPNYKYRP-QKKQTRS------- 265
            .|||||||:||.||:.|:.|:...|:|::.|||:||..|:.:||:||||| :|||.:.       
 Frog    80 NPDLHNAELSKMLGKSWKSLTLASKRPFVEEAERLRVQHIQDYPDYKYRPRRKKQVKRMKREEEG 144

  Fly   266 --PGSLKPNQDADGCEA--------RNDTTNNNNSLTT------------------------LAI 296
              |.:..|.....||.|        :....|:..|..|                        ::.
 Frog   145 FLPSADIPGPQVMGCNAMVGQNYKMQYSGQNSQQSQITPAGYFEDHNPVGYYYRGYNVPEYYMSQ 209

  Fly   297 NGTTTAGRKSK---RSTSTCQSGSASKRLRNDSGDTSSKP---KYEVKMESAEQLNSADIILPSA 355
            |.:.|.|..::   ::.|...:.|.....:|.|.....|.   |..:..||.|.......:.|. 
 Frog   210 NSSVTCGPPAQGEYQALSYNFNSSYIPYQQNASAPAMGKQMAVKENIIQESPEHGIMGCQVSPQ- 273

  Fly   356 DNLISYQSSEYLPLSTLSNADCDEKLHSELSSGPLESRENLSEVVNRFLPLFLGGNEDSQLGVSS 420
                .|....|:|....::.....:.||.|       .::...|...:||        ||     
 Frog   274 ----MYNGQMYVPECAKTHPVAQTEQHSSL-------HQSQQMVTQNYLP--------SQ----- 314

  Fly   421 LTQSQHNQSDPTAGLMDNISDISPINDREELTEEVMRYLPYLEVNPSSDGLTLKVESSSLLGKPL 485
              |..|.:||               .|:.|..:       ||...|.||                
 Frog   315 --QDGHLESD---------------IDKTEFDQ-------YLMYEPKSD---------------- 339

  Fly   486 NEPVFDSEDNIVNDANLHSASHQIPPYVPDSHD-CFAEDCG 525
            .|.::    .|..|:..:| ::.:|..:.:::. |:.:.||
 Frog   340 TELIY----TIDQDSGAYS-TNLLPSLISEANSVCYYDYCG 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684 37/70 (53%)
sox17b.1NP_988849.1 SOX-TCF_HMG-box 57..128 CDD:238684 37/70 (53%)
PABP-1234 <80..250 CDD:130689 47/169 (28%)
Required for transcriptional activity and interaction with ctnnb1. /evidence=ECO:0000250|UniProtKB:O42601 327..331 1/10 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R685
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.040

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