DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and Sox8

DIOPT Version :9

Sequence 1:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001100459.1 Gene:Sox8 / 302993 RGDID:1309072 Length:463 Species:Rattus norvegicus


Alignment Length:511 Identity:123/511 - (24%)
Similarity:194/511 - (37%) Gaps:146/511 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 VAAAAPKTPKTPE-PRSTHTHTHTHSQHFSPPPRESEMDG---------------ERSPSHSGHE 146
            ::.|..:.|.:|. ..|:.:|.........|.|..||..|               ||.|:.....
  Rat     4 MSEARAQPPCSPSGTASSMSHVEDSDSDAPPSPAGSEGLGRAGGGGRGDTAEAADERFPACIRDA 68

  Fly   147 MTLSMDGIDSSLVFGSARVPVNSSTPYSDATRTKKHSPGHIKRPMNAFMVWSQMERRKICERTPD 211
            ::..:.|.|.|||    .:||...     ...|.|..| |:||||||||||:|..|||:.::.|.
  Rat    69 VSQVLKGYDWSLV----PMPVRGG-----GGGTLKAKP-HVKRPMNAFMVWAQAARRKLADQYPH 123

  Fly   212 LHNAEISKELGRRWQLLSKDDKQPYIIEAEKLRKLHMIEYPNYKYRPQKKQTRSPGSLKPNQDAD 276
            |||||:||.||:.|:|||:.:|:|::.|||:||..|..::|:|||:|:::::...|    ..|:|
  Rat   124 LHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKTG----RSDSD 184

  Fly   277 -GCEA---------RNDTT---NNNNSLTTLAINGTTTAGRKSKRSTSTCQSGSASK-RLRN--- 324
             |.|.         :.||.   .:.:|..|...:|..|.....|.......:||..: ||..   
  Rat   185 SGTELGHHPGGPMYKTDTVLGDAHRHSDHTGQTHGPPTPPTTPKTDLHQASNGSKQELRLEGRRL 249

  Fly   325 -DSG----DTSSKPKYEVKMESAEQLNSADIILPSADNLISYQSSEYLPLSTLSNADCDEKLHSE 384
             |||    |.|:....|:..|....:::.|:          ::..:||||:.          ||.
  Rat   250 VDSGRQNIDFSNVDISELSSEVISNMDTFDV----------HEFDQYLPLNG----------HSA 294

  Fly   385 LSSGPLESRENLSEVVNRFLPLFLGGNEDSQLGVSSLTQSQHNQSDPTAGLMDNISDISPINDRE 449
            |::.|.::..:.|          .||...|..|.:.:                   ..||:    
  Rat   295 LATEPSQATASGS----------YGGASYSHSGATGI-------------------GASPV---- 326

  Fly   450 ELTEEVMRYLPYLEVNPSSDGLTLKVESSSLLGKPLNEPVFDSEDNIVNDANLHSASHQIPP--Y 512
                ...:..|....:|:..|             ||..               |..:.|:.|  |
  Rat   327 ----WAHKGAPSASASPTEAG-------------PLRP---------------HIKTEQLSPSHY 359

  Fly   513 VPDSHDCFAEDCGGDSSSHQVEFEVVRPQTVTMTMTCTLPYGGPDAGHTTFQADDF 568
            ...||   ......|..|:..:..|    |...:.|....:......:|..||.::
  Rat   360 NDQSH---GSPGRADYGSYSAQASV----TTAASATAASSFASAQCDYTDLQASNY 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684 40/70 (57%)
Sox8NP_001100459.1 Sox_N 18..86 CDD:403592 16/71 (23%)
SOX-TCF_HMG-box 98..168 CDD:238684 39/69 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342380
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.740

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