DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and Sox6

DIOPT Version :10

Sequence 1:NP_476894.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:XP_038962229.1 Gene:Sox6 / 293165 RGDID:1309000 Length:855 Species:Rattus norvegicus


Alignment Length:434 Identity:126/434 - (29%)
Similarity:172/434 - (39%) Gaps:91/434 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 IAKPNQATTEPPLSL--RPGTVPTVPATTPARPATITIQRRHPAPKADSTPHTLPPFSPSPSPAS 64
            :.:....||..||:|  ||.|..  |..:|..|.    |...||.|  ::|..|      |:.:|
  Rat   441 VTQVKDETTAQPLNLSSRPKTAE--PVKSPTSPT----QSLFPASK--TSPVNL------PNKSS 491

  Fly    65 SPSPAPAQTPGAQKTQSQAAITHPAAVASPSAPVAAAAPKTPKTPE--PRSTHTHTH-------- 119
            .|||..............:::..||....... |..|..:..|..|  .|......|        
  Rat   492 IPSPIGGSLGRGSSLDILSSLNSPALFGDQDT-VMKAIQEARKMREQIQREQQQQPHGVDGKLSS 555

  Fly   120 ---------------THSQHFSPP-PRESEMDGERSPSHSGHEMTLSMDGIDSSLVFGSARV--- 165
                           |..::..|. ..:|..||:..|...  ::|...|...|..:.|||..   
  Rat   556 MNSMGLSNCRNEKERTRFENLGPQLTGKSSEDGKLGPGVI--DLTRPEDAEGSKAMNGSAAKLQQ 618

  Fly   166 ----PVNSST-----PYSDATRTKKHSPGHIKRPMNAFMVWSQMERRKICERTPDLHNAEISKEL 221
                |...:|     .|.|| |.:..|..||||||||||||::.|||||.:..||:||:.|||.|
  Rat   619 YYCWPTGGATVAEARVYRDA-RGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKIL 682

  Fly   222 GRRWQLLSKDDKQPYIIEAEKLRKLHMIEYPNYKYRPQKKQT-----------------RSPGSL 269
            |.||:.:|..:||||..|..:|.|:|:.:||||||:|:.|:|                 ||....
  Rat   683 GSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQE 747

  Fly   270 KPNQDADGCEARNDTTNNNNSLTTLAINGTTTAGRKSKRSTSTCQSGSASKRLRNDSGDTSSKP- 333
            .......|.:.:...|.....:...||...||.  .|.:.||.|.|.|||..        .|.| 
  Rat   748 MRQFFTVGQQPQIPITTGTGVVYPGAITMATTT--PSPQMTSDCSSTSASPE--------PSLPV 802

  Fly   334 ---KYEVKMESAEQLNSADIILPSADNLISYQSSEYLPLSTLSN 374
               .|.:||:.| .|...|:| ...|.:.:|...|..|.|..|:
  Rat   803 IQSTYGMKMDGA-SLAGNDMI-NGEDEMEAYDDYEDDPKSDYSS 844

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_476894.1 HMG-box_SoxC 186..261 CDD:438838 44/74 (59%)
Sox6XP_038962229.1 HMG-box_EGL13-like 646..723 CDD:438848 44/76 (58%)

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