DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and sox10

DIOPT Version :9

Sequence 1:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_571950.1 Gene:sox10 / 140616 ZFINID:ZDB-GENE-011207-1 Length:485 Species:Danio rerio


Alignment Length:632 Identity:139/632 - (21%)
Similarity:223/632 - (35%) Gaps:222/632 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 APKADSTPHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAITHPAAVASPSAPVAAAAPKTPK 107
            :|......|::.|...|.:|..:.||.|.|       |||.     :.:....|.|:.....   
Zfish    14 SPGVSDDGHSMSPGHSSGAPGGADSPLPGQ-------QSQM-----SGIGDDGAGVSGGVSV--- 63

  Fly   108 TPEPRSTHTHTHTHSQHFSPPPRESEMDGERSPSHSGHEMTLSMDGIDSSLVFGSARVPVNSSTP 172
                                   :|:.:.:|.|......::..::|.|.:||  ...|.|||.: 
Zfish    64 -----------------------KSDEEDDRFPIGIREAVSQVLNGYDWTLV--PMPVRVNSGS- 102

  Fly   173 YSDATRTKKHSPGHIKRPMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQLLSKDDKQPYI 237
                    |..| |:||||||||||:|..|||:.::.|.|||||:||.||:.|:||::.||:|:|
Zfish   103 --------KSKP-HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNETDKRPFI 158

  Fly   238 IEAEKLRKLHMIEYPNYKYRPQKKQTRSPGSLKPNQDADGCEARNDTTNNNNSLTTLAINGTTTA 302
            .|||:|||.|..:||.|||:|::::...|||   :.:|| ..:..:.:::.:...:|.:      
Zfish   159 EEAERLRKQHKKDYPEYKYQPRRRKNGKPGS---SSEAD-AHSEGEVSHSQSHYKSLHL------ 213

  Fly   303 GRKSKRSTSTCQSGSASKRLRND-----SGDTSS------KPKYEV--------KMESAEQLNSA 348
                    .....|:|...|.:.     :|.:.|      .||.|:        |.|.....:..
Zfish   214 --------EVAHGGAAGSPLGDGHHPHATGQSHSPPTPPTTPKTELQGGKSGEGKREGGASRSGL 270

  Fly   349 DIILPSADNLISYQSSEYLPLSTLSNADCDEKLHSELSS-GPLESRENLSEVVNRFLPLFLGGNE 412
            .:   .||...:..|:...|.....|.|..|..|..::: .|.:..|     .:::||       
Zfish   271 GV---GADGSSASSSASGKPHIDFGNVDIGEISHDVMANMEPFDVNE-----FDQYLP------- 320

  Fly   413 DSQLGVSSLTQSQHNQSDPTAGLMDNISDISPINDREELTEEVMRYLPYLEVNPSSDGLTLKVES 477
                      .:.|.|:..||                             ....::...|..: |
Zfish   321 ----------PNGHPQASATA-----------------------------SAGSAAPSYTYGI-S 345

  Fly   478 SSLLGKPLNEPVFDSEDNIVNDANLHSASHQIPPYVPDSHDCFAEDCGGDSSSHQVEFEVVRP-- 540
            |:|..                 |:.||.:......:|..     :..|.|....|::.|...|  
Zfish   346 SALAA-----------------ASGHSTAWLSKQQLPSQ-----QHLGADGGKTQIKSETHFPGD 388

  Fly   541 -----QTVTMTMTCTLPYGGPDAGHTTFQADDFNAIPSAAEDSECSILTTSNSPQIGFNGSSFVE 600
                 ..||.| ..|||:..             :|.||.|..::                  |.|
Zfish   389 TAASGSHVTYT-PLTLPHYS-------------SAFPSLASRAQ------------------FAE 421

  Fly   601 ADAIGSTCTYAQQDYTGSVIETHNDLNYAAHDNNGALLAYTFEDLPP 647
                     ||:...:||         |.||.:..:.|...|..:.|
Zfish   422 ---------YAEHQASGS---------YYAHSSQTSGLYSAFSYMGP 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684 43/70 (61%)
sox10NP_571950.1 Sox_N 13..97 CDD:289229 21/122 (17%)
SOX-TCF_HMG-box 107..177 CDD:238684 42/69 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582376
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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