DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox14 and sox32

DIOPT Version :10

Sequence 1:NP_476894.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_571926.1 Gene:sox32 / 116990 ZFINID:ZDB-GENE-011026-1 Length:307 Species:Danio rerio


Alignment Length:173 Identity:58/173 - (33%)
Similarity:94/173 - (54%) Gaps:33/173 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 TPKTPEPRSTHTHTHTHSQHFSPPPRESEMDGERSPSH---SGHEMTLSMDGIDSSLVFGSARVP 166
            |.:.||.:..|     :.||        :.|.:|..:|   ||....:|: |.:||.....|:.|
Zfish    15 TTRMPEIQQCH-----YLQH--------QNDEQRRTAHCPASGPLSPVSV-GSESSCSSPEAKAP 65

  Fly   167 VNSSTPYSDATRTKKHSPGHIKRPMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQLLSKD 231
            |.:                .::||:|||::|::.|||::.:..|||.|.::||.||:.|:.:|..
Zfish    66 VET----------------RVRRPLNAFIIWTKEERRRLAQLNPDLENTDLSKILGKTWKAMSLA 114

  Fly   232 DKQPYIIEAEKLRKLHMIEYPNYKYRPQKKQTRSPGSLKPNQD 274
            ||:||:.|||:||..|.|:||||||||::::.....|..|:.:
Zfish   115 DKRPYMQEAERLRIQHTIDYPNYKYRPRRRKCNKRSSKMPSSE 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_476894.1 HMG-box_SoxC 186..261 CDD:438838 38/74 (51%)
sox32NP_571926.1 HMG-box_SoxF 69..144 CDD:438841 38/74 (51%)

Return to query results.
Submit another query.