DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox14 and Lpxn

DIOPT Version :9

Sequence 1:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_598913.1 Gene:Lpxn / 107321 MGIID:2147677 Length:386 Species:Mus musculus


Alignment Length:135 Identity:33/135 - (24%)
Similarity:45/135 - (33%) Gaps:19/135 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 DSTPHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAITHPAAV--------ASPSAPVAAAAP 103
            ||..::.|........::..|..| |||   ||.|....|.|..|        ..|:.......|
Mouse    18 DSEEYSNPVSCHLDQQSTEESKIP-QTP---KTLSSQGNTSPLKVQLVYATNIQEPNVYSEVQEP 78

  Fly   104 KTPKTPEPRSTHTHTHTHSQHFSPPPRESEMDGERS----PSHSGHEMTL-SMDG-IDSSLV-FG 161
            |....|...|..........|.|....:..:..:.|    |....|:.:| ||.| ::..|. .|
Mouse    79 KESVLPPKTSAAAQLDELMAHLSEMQAKVSVKADTSRKPLPDQQDHKASLDSMLGDLEQELQDLG 143

  Fly   162 SARVP 166
            .|.||
Mouse   144 IATVP 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684
LpxnNP_598913.1 LD motif 1 3..15
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..52 10/36 (28%)
LD motif 2 70..82 2/11 (18%)
LD motif 3 92..103 2/10 (20%)
LIM 150..204 CDD:295319
LIM 211..262 CDD:295319
LIM 270..322 CDD:295319
LIM4_Paxillin_like 329..380 CDD:188725
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.