DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and PDLIM5

DIOPT Version :9

Sequence 1:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001243355.2 Gene:PDLIM5 / 10611 HGNCID:17468 Length:625 Species:Homo sapiens


Alignment Length:605 Identity:118/605 - (19%)
Similarity:188/605 - (31%) Gaps:190/605 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LSLRPGTVPTVPATTPARPATITI------------QRRHP-----------APKADSTPHTLPP 55
            ::|:..:....|...|.:..|:|.            |||..           .||.....|.:..
Human    79 MTLQRASAAPKPEPVPVQKPTVTSVCSETSQELAEGQRRGSQGDSKQQNGKIPPKRPPRKHIVER 143

  Fly    56 FS-----PSPSPASS-----------PSPAPAQTPG----AQKT------QSQAAITHPAAVASP 94
            ::     |:.|.||.           |.....|:..    ||.|      :|:|..|..|...|.
Human   144 YTEFYHVPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQITGTEHLKESEADNTKKAKFDSA 208

  Fly    95 SAPVAAAAPKTPKTPEPRSTHTHTHTHSQHFSPPPRESEMDGERSPSHSGHE--MTLSMDGIDSS 157
            ...:..:.|..|.||:..:..:...|.|:..:.....|...|....|..|..  .|.|.....|:
Human   209 LEDLPKSGPHPPATPQVLTIGSQVATLSKVATTYSSLSSSTGNVEDSFEGFRNFSTFSSPARYSA 273

  Fly   158 LVFGSARVPVNSSTPYSDATRTKKHSPGHIKRPMNAFMVWSQMERRKICERTPDLHNAEISKELG 222
            .|..||...|::..    ||:|:.::|......::|..:                  :.:||.|.
Human   274 AVLSSAAATVSAVI----ATKTRLYTPERYHSLLDALCI------------------SPVSKPLA 316

  Fly   223 RRWQLLSKDDKQPYIIEAEKLRKLHMIEYPNYKYRPQKKQTRS-PGSLKPNQDADGCEARNDTTN 286
              :..|....|....|.   ::|....:.|:.:.......||| |.||            :..|:
Human   317 --FSYLQSSRKSTGSIH---VKKTSNSQEPSPQLASSVASTRSMPESL------------DSPTS 364

  Fly   287 NNNSLTTLAINGTTTAGRKSKRSTSTCQSGSASKRLRN--DSGDTSSKPKYEVKMESAEQLNSA- 348
            ....:|:|    |..|..|...||...:|.|..:..:.  .:|..|:...|...:..|   ||| 
Human   365 GRPGVTSL----TAAAAFKPVGSTGVIKSPSWQRPNQGVPSTGRISNSATYSGSVAPA---NSAL 422

  Fly   349 DIILPS-ADNLISYQSSEYLPLS--TLSNADCDEKLHSELSSGPLESRENLSEVVNRFLPLFLGG 410
            ....|| .|.|:  |.:|::|..  |...|.|::.:.     ||.                    
Human   423 GQTQPSDQDTLV--QRAEHIPAGKRTPMCAHCNQVIR-----GPF-------------------- 460

  Fly   411 NEDSQLGVSSLTQSQHNQSDPTAGLMDNISDISPINDREELTEEVMRYLPYLEV------NPSSD 469
                   :.:|.:|.|.:....|...:.::.|..:.::..|         |.|:      .|...
Human   461 -------LVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGAL---------YCELCYEKFFAPECG 509

  Fly   470 GLTLKV--ESSSLL--------------GKPLNEPVFDSEDNIVNDANLHSASHQIPPYV-PDSH 517
            ....|:  |..|.|              |||:...||..||.              .||. .|.:
Human   510 RCQRKILGEVISALKQTWHVSCFVCVACGKPIRNNVFHLEDG--------------EPYCETDYY 560

  Fly   518 DCFAEDCGGDSSSHQVEFEV 537
            ..|...|      |..||.:
Human   561 ALFGTIC------HGCEFPI 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684 9/70 (13%)
PDLIM5NP_001243355.2 PDZ_signaling 10..82 CDD:238492 0/2 (0%)
DUF4749 105..201 CDD:406377 17/95 (18%)
LIM1_ENH 449..500 CDD:188837 12/91 (13%)
LIM 508..559 CDD:413332 13/64 (20%)
LIM3_ENH 567..621 CDD:188843 4/14 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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