DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and HMG20B

DIOPT Version :10

Sequence 1:NP_476894.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_006330.2 Gene:HMG20B / 10362 HGNCID:5002 Length:317 Species:Homo sapiens


Alignment Length:317 Identity:72/317 - (22%)
Similarity:110/317 - (34%) Gaps:87/317 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 PSAPVAAAAPKTPKTPEPRSTHTHTHTHSQH--FSPPPRESEMDGERSPSHSGHEMTLSMDGIDS 156
            |..|.|||||...|.|            .||  |....::...:|.|:.....||          
Human     5 PKQPGAAAAPAGGKAP------------GQHGGFVVTVKQERGEGPRAGEKGSHE---------- 47

  Fly   157 SLVFGSARVPVNSSTPYSDATRTKKHSPGHIKRPMNAFMVWSQMERRKICERTPDLHNAEISKEL 221
                   ..|| ....:....:.||..|...|.|:..::.:....|.:|..|.|||...||:|.|
Human    48 -------EEPV-KKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKML 104

  Fly   222 GRRWQLLSKDDKQPYIIEAEKLRKLHMIE---YPN---YKYRPQKKQTRSPGSLKPNQDADGCEA 280
            |..|..|...:||.|:.|||:.::.:|.|   |..   ||...:|.|.:   .:|....:.|   
Human   105 GAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEK---KIKKEDSSSG--- 163

  Fly   281 RNDTTNNNNSLTTLAINGTTTAGRKSKRSTSTCQSGSASKRLRNDSGDTSSKPKYEVKMESAEQL 345
                      |....:||                         :..||......::|.:.:.|.|
Human   164 ----------LMNTLLNG-------------------------HKGGDCDGFSTFDVPIFTEEFL 193

  Fly   346 N-----SADIILPSADNLISYQSSEYLPLSTLSNADCDEKLHSELSSGPLESRENLS 397
            :     .|::......|:...:.:..|...|.|.:...|:|..||:   ||.|..|:
Human   194 DQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELA---LEERRTLA 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_476894.1 HMG-box_SoxC 186..261 CDD:438838 26/80 (33%)
HMG20BNP_006330.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..71 21/95 (22%)
HMG-box_HMG20B 69..147 CDD:438834 26/77 (34%)

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