DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox14 and sox17b.2

DIOPT Version :9

Sequence 1:NP_001286801.1 Gene:Sox14 / 37822 FlyBaseID:FBgn0005612 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001090837.1 Gene:sox17b.2 / 100038235 XenbaseID:XB-GENE-495335 Length:351 Species:Xenopus tropicalis


Alignment Length:393 Identity:100/393 - (25%)
Similarity:172/393 - (43%) Gaps:92/393 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 TPYSDATRTKKH---------SPGHIKRPMNAFMVWSQMERRKICERTPDLHNAEISKELGRRWQ 226
            |.:.|| :|||.         :...|:|||||||||::.||:::.::.|||||||:||.||:.|:
 Frog    12 TMFQDA-KTKKEAGSANSRGKAEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWK 75

  Fly   227 LLSKDDKQPYIIEAEKLRKLHMIEYPNYKYRP-QKKQTRS------PGSLKPNQDADGCEARNDT 284
            .|:...|:|::.|||:||..|:.:||:||||| :|||.:.      |.:..|.....||   |..
 Frog    76 SLTLASKRPFVKEAERLRVQHIQDYPDYKYRPRRKKQVKREEEGFLPSADIPGPQVMGC---NAM 137

  Fly   285 TNNNNSLTTLAINGTTTAGRKSKRSTSTCQSGSASKRLRNDSG---DTSSKPKYEVKMESAEQLN 346
            ...|..:        ..:|:.|::|..| .:|....  .|..|   ...:.|||.:..      |
 Frog   138 VGQNYKM--------QYSGQNSQQSQIT-PAGYFED--HNPVGFYYRGYNVPKYYMSQ------N 185

  Fly   347 SADIILPSAD---NLISYQ-SSEYLPLSTLSNADCDEKLHSELSSGPLESRENLSEVVNRFLPLF 407
            |:....|...   ..:||. :|.|:|....::|....|        .:..:||:.:         
 Frog   186 SSGYCSPPTQGEYQALSYNFNSSYIPYQQNASAPAMGK--------QMAVKENIIQ--------- 233

  Fly   408 LGGNEDSQLGV--SSLTQSQHN---------QSDPTAGLMDNISDISPINDREELTEEVMRYLPY 461
                |..:.|:  ..::...:|         ::.|.|    .....|.::..:::..:  .||| 
 Frog   234 ----ESPEHGIMGCQVSPQMYNGQMYVPECAKTHPVA----QTEQHSSLHQSQQMVTQ--NYLP- 287

  Fly   462 LEVNPSSDG-LTLKVESSSLLGKPLNEPVFDSE--DNIVNDANLHSASHQIPPYVPDSHD-CFAE 522
                ...|| |...::.:......:.||..|:|  ..|..|:..:| ::.:|..:.:::. |:.:
 Frog   288 ----SQQDGHLESDIDKTEFDQYLMYEPKSDTELIYTIDQDSGAYS-TNLLPSLISEANSVCYYD 347

  Fly   523 DCG 525
            .||
 Frog   348 YCG 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox14NP_001286801.1 SOX-TCF_HMG-box 186..257 CDD:238684 37/70 (53%)
sox17b.2NP_001090837.1 SOX-TCF_HMG-box 35..106 CDD:238684 37/70 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R685
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.040

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