DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3065 and l(3)neo38

DIOPT Version :10

Sequence 1:NP_611861.1 Gene:CG3065 / 37818 FlyBaseID:FBgn0034946 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001262485.1 Gene:l(3)neo38 / 41423 FlyBaseID:FBgn0265276 Length:455 Species:Drosophila melanogaster


Alignment Length:106 Identity:41/106 - (38%)
Similarity:57/106 - (53%) Gaps:5/106 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 KRKFVCPYDNCTKSYGKSSHLRSHLTWHTGIKPFVCSEPKCGKGFTRSDELNRHLRTHTGEKPFE 170
            :|:|||  |.|..:..:..||..|...|...:|.||:  .|.|.|.|.::|..|:..|:|||...
  Fly   328 ERRFVC--DICNAALKRKDHLTRHKLSHIPDRPHVCN--ICMKSFKRKEQLTLHIVIHSGEKKHV 388

  Fly   171 CIQCTKKFSRSDHLTKHLATH-DRQLKGSTPKRTVPSSSGG 210
            ||:|.|.|.|.|||.||..:| .|::|.....:.|..|:||
  Fly   389 CIECGKGFYRKDHLRKHTRSHIARRVKSEVSAQNVNGSAGG 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3065NP_611861.1 COG5048 99..>400 CDD:227381 41/106 (39%)
C2H2 Zn finger 111..133 CDD:275368 6/21 (29%)
C2H2 Zn finger 141..163 CDD:275368 7/21 (33%)
C2H2 Zn finger 171..191 CDD:275368 11/19 (58%)
C2H2 Zn finger 348..368 CDD:275368
C2H2 Zn finger 376..396 CDD:275368
l(3)neo38NP_001262485.1 C2H2 Zn finger 305..325 CDD:275368
C2H2 Zn finger 333..353 CDD:275368 6/21 (29%)
COG5048 341..>455 CDD:227381 35/91 (38%)
C2H2 Zn finger 361..381 CDD:275368 7/21 (33%)
C2H2 Zn finger 389..409 CDD:275368 11/19 (58%)
Blue background indicates that the domain is not in the aligned region.

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