DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Alas and sptlc2a

DIOPT Version :9

Sequence 1:NP_477281.1 Gene:Alas / 37815 FlyBaseID:FBgn0020764 Length:539 Species:Drosophila melanogaster
Sequence 2:NP_001018455.1 Gene:sptlc2a / 553646 ZFINID:ZDB-GENE-050522-23 Length:534 Species:Danio rerio


Alignment Length:432 Identity:121/432 - (28%)
Similarity:205/432 - (47%) Gaps:43/432 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 YERFFNEQIMKKKRDHSYR--------VFKKVNRLAGDGLFPHALEYSERTEKPITVWCSNDYLG 151
            :|.|:...:..:.||...|        .|..|.|.:.|  :....||:.|..|.:....|.:|||
Zfish    90 FENFYTRNLYMRIRDSWNRPICSVPGAKFDLVERSSND--YNWTFEYTGRVVKDVINLGSYNYLG 152

  Fly   152 MSAHPG-VKRAVQDALNRHGSGAGGTRNISGNSLHHERLESKLAELHQKEAALLFTSCFVANDST 215
            .:.:.| ...|..:...:.|.|..|||...||...||:||..:|...:.|:|:.|...|..|...
Zfish   153 FAENTGSCATAAGEVTVKFGVGVAGTRQEMGNLDRHEKLEKLVASFLRVESAMAFGMGFATNSMN 217

  Fly   216 LFTLAKLLPGCEIFSDAGNHASMIMGIRNSGVPKHIFRHNDVDHLHQLLK--------QTDKSVP 272
            :..||.  .||.|.||..||||:::|.|.||....:|:||::..|.:||:        :|.:...
Zfish   218 IPALAG--KGCLILSDELNHASLVLGARLSGSTIRVFKHNNMQSLEKLLRDAIVHGQPRTHRPWK 280

  Fly   273 KI-VAFETVHSMTGAICPLEELLDVAHEHGAITFIDEVHAVGLYGDHGAGVGERDGV-LHKMDII 335
            || :..|.::||.|:|..|.|::.:..::.|..::||.|::|..|..|.||.|..|: ...:||:
Zfish   281 KILILVEGIYSMEGSIIRLPEVIALKKKYKAYLYLDEAHSIGALGPGGRGVVEYFGLDPRDVDIM 345

  Fly   336 SGTLGKAFGNIGGYIAGTHNLVDMIRSYAAGFIFTTSLPPTVLCGALEAVNILASEEGRQL-RHL 399
            .||..|:||..||||.|..:|:|.:|:::...::.:|:...|:...:.::..:..|:|..: |..
Zfish   346 MGTFTKSFGAAGGYIGGRKDLIDYLRTHSHSAVYASSMSAPVVEQIITSMKCIMGEDGTTIGRSR 410

  Fly   400 HQR---NVSYLKSLLKREGFPV-EETPSHIIPIKIGDPLKSSQISNVLIEQFGHYLQSINYPTVA 460
            .||   |..|.:..|:..||.: ....|.::|:.:..|.|        |..||..:...|...|.
Zfish   411 IQRLAENTVYFRRRLREMGFIIYGNNDSPVVPMMLYMPAK--------IGAFGREMLKRNIGVVV 467

  Fly   461 RG-------QEKLRLAPTPFHTFEMMNALVTDLKKVWEMVDL 495
            .|       :.:.|...:..|:.||::..:..:.:|.:::.|
Zfish   468 VGFPATPIIESRARFCISAAHSKEMLDRALDVISEVGDLLQL 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlasNP_477281.1 AAT_I 93..495 CDD:302748 120/430 (28%)
BioF 95..490 CDD:223234 119/425 (28%)
sptlc2aNP_001018455.1 PLN02483 39..515 CDD:178101 121/432 (28%)
BioF 89..504 CDD:223234 119/425 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0156
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.