DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stoml2 and Stoml1

DIOPT Version :9

Sequence 1:NP_001261161.1 Gene:Stoml2 / 37807 FlyBaseID:FBgn0034936 Length:366 Species:Drosophila melanogaster
Sequence 2:NP_001292167.1 Gene:Stoml1 / 300748 RGDID:1559463 Length:398 Species:Rattus norvegicus


Alignment Length:147 Identity:40/147 - (27%)
Similarity:66/147 - (44%) Gaps:3/147 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 PIN--MCVMFVPQQEAWVVERMGRFHRILDPGLNILVPVADKIKYVQSLKEIAIDVPKQSAITSD 100
            ||:  ..:..||..|..:|.|:||......||:.:|:|..|..:.| .|:..|.:||.....:.|
  Rat    72 PISGWFALKIVPTYERMIVFRLGRIRNPQGPGMVLLLPFIDSFQRV-DLRTRAFNVPPCKLASKD 135

  Fly   101 NVTLSIDGVLYLRIIDPYKASYGVEDPEFAITQLAQTTMRSELGKMSMDKVFRERESLNVSIVDS 165
            ...||:...:..||.||..:...|:|...|....|...|...|.:..:.::..|:..:...::..
  Rat   136 GAVLSVGADVQFRIWDPVLSVMAVKDLNAATRMTAHNAMTKALLRRPLQEIQMEKLKIGDQLLLE 200

  Fly   166 INKASEAWGIACLRYEI 182
            ||..:.|||:...|.|:
  Rat   201 INDVTRAWGLEVDRVEL 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Stoml2NP_001261161.1 PHB 41..199 CDD:214581 38/142 (27%)
SPFH_paraslipin 80..188 CDD:259811 26/103 (25%)
Band_7_C 266..326 CDD:292817
Stoml1NP_001292167.1 PHB 77..217 CDD:214581 37/140 (26%)
SPFH_SLP-1 94..224 CDD:259814 33/125 (26%)
SCP2 304..395 CDD:280250
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0330
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.