DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and CTI6

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_015144.1 Gene:CTI6 / 855920 SGDID:S000006102 Length:506 Species:Saccharomyces cerevisiae


Alignment Length:507 Identity:93/507 - (18%)
Similarity:164/507 - (32%) Gaps:154/507 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   632 GRNPTEKSEFGDSNMLECPSCTS-----------------QSSCPV----CKVSYSNGE------ 669
            |....||:|...|...:..|.||                 |...|:    .:|....||      
Yeast    14 GSEDMEKAEVIASGSTDIISTTSTATTTAAIGSVQEESVKQEDVPMEGGEGEVEEEEGETRCICG 78

  Fly   670 ---------MIIQCEHCELWAHFHCDSVNAQLTIDHYDN--NVYKCFKCR-----------CSTR 712
                     ..||||.|..|.|.:|.|:.       .||  :.|.|.:||           ...|
Yeast    79 ELDTPDDSGFFIQCEQCSSWQHGYCVSIT-------QDNAPDKYWCEQCRPELHQLFTTDTGEAR 136

  Fly   713 STNSLADAKFGNEDSLAITPQGSKPFVHITASSGPSFDSKSGAERNHPTLSGDMPESAPEALHWI 777
            |.......|.......|.:...||......|...|.  :.|..:.|...:..:..|...||    
Yeast   137 SIYKPVQEKRRQSRRKARSAAASKSHAANEAEKSPR--NTSNTDDNVDDIGDEEDEVEDEA---- 195

  Fly   778 DGVCLSESGLGMIKSLSTEIKRKRKMRQA------LGNG-----------------KDGQLEAAA 819
            ..|.|::.|    .:.|:..:|:..|..|      |..|                 ::.|.:...
Yeast   196 SAVALAKDG----NTRSSRRRRRNSMDDASTDQYSLDPGDSDKKLLDRKRATFMAREEKQYQRML 256

  Fly   820 EEAL------------EKYK-DGMVWDG------------TENAIPEGFTISI-NDEGVNILRKK 858
            |:||            |.|: |..::.|            |:..:.||...|: ||:....||..
Yeast   257 EKALKESRRTSHQEDPESYENDADIYQGDTDNHNGTTRLQTDVMLTEGKPDSVTNDDMKESLRPS 321

  Fly   859 RQRNLQKLG-----IGGFSVRNRGLKKDSEET----TAVDQINSLMTMDKKKKIIRKKQKNKLIE 914
            ::::::|..     .......:.|..:|:|:|    ..:..|:|  :.|..:|...:..|.    
Yeast   322 KEQSMEKTNDVEKEASQEKESSTGSAQDTEKTDEPILPLTSISS--SEDDSRKASSRGSKR---- 380

  Fly   915 AYPVYLQEAFFGKPLLEGGELVMADTDS-------SDEIDASMKVYFTRPEGKSPANQDTLAVNK 972
                      ..||..:|.....::|.|       |.:|.....|....|..::..|:....|: 
Yeast   381 ----------VSKPARKGNRTRRSNTSSDTNQNRRSADIGTDKPVKPRLPPQRTSLNEMRRRVS- 434

  Fly   973 SPAKTVKKVKAELKTE--NKTVFIQQMPMGIQNKNGTTPVSNVFDPLQAEIS 1022
            :..:.:.:.:.||..:  ::..|::    .::|::....|..:::.....:|
Yeast   435 AILEFISRTQWELSEDQSDREEFVR----FVENQHFVEKVDTIYNGYNESLS 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989 17/70 (24%)
NHP6B 1101..>1237 CDD:227935
HMG 1173..1231 CDD:197700
CTI6NP_015144.1 PHD_MLL5 74..120 CDD:277025 13/52 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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