DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lpt and BYE1

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_012921.3 Gene:BYE1 / 853865 SGDID:S000001488 Length:594 Species:Saccharomyces cerevisiae


Alignment Length:609 Identity:107/609 - (17%)
Similarity:217/609 - (35%) Gaps:173/609 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   636 TEKSEFGDSNMLECPSCTSQSSCPVCKVSYSNGEMIIQCEHCELWAHFHCDSVNAQLTIDHY--D 698
            |::.:..|...:.|....:..:....:  ||:|:| :||:.|:.|.|..| ..:.:.|||..  :
Yeast    62 TDEVDEADEGYVRCLCGANNENYDAAE--YSHGDM-VQCDGCDTWQHIKC-MTDGKDTIDGLMSE 122

  Fly   699 NNVYKCFKC------RCSTRSTNSLADAKFGNEDSLAITPQGSKPFVHITASSGPSFDSKSGAER 757
            ::.|.|..|      ...|.....:::.:..::|            |:...:.....|:....:.
Yeast   123 DSKYYCELCDPSLYAHLETSKEAEVSEDEDYHDD------------VYKPVNDHDDNDADVFLDE 175

  Fly   758 NHPTLSGDMPESAPEALHWIDGVCLSESGLGMIKSLSTEIKRKRKMRQALGNGKDGQLEAAAEEA 822
            ..|......|:|| :.:|              |||        ::::::.|:.|..:...||:. 
Yeast   176 ESPRKRKRSPDSA-KGIH--------------IKS--------KQVKKSNGSKKRNKSIDAAKS- 216

  Fly   823 LEKYKDGMVWDGTENAIPEGFTISINDEGVNILRKKRQRNLQKLGIGGFSVRNRGLKKDSEETTA 887
                      |..||.:|.........|      .|.:.|.:|:....||      |....||..
Yeast   217 ----------DTAENEMPTRKDFESEKE------HKLRYNAEKMFSTLFS------KFIVPETIE 259

  Fly   888 VDQINSLMTMDKKKKIIRKKQKNKLIEAYPVYLQEAFFGKPL-LEGGELVMADTDS--------S 943
            .    .|..:...|.:|...|:      :...|:|..:...| :|.|.|....|:.        .
Yeast   260 A----KLYELPDGKDVISISQE------FAHNLEEELYKACLNVEFGTLDKIYTEKVRSLYSNLK 314

  Fly   944 DEIDASMKVYFTRPEGKSPANQDTLAVNKSPAKTV-------KKVKAELKTENKTVFIQQMPMGI 1001
            |:.:..:|.:..  |||.|.|:   .||.:.::..       |:.:.::..||..|.:...||.:
Yeast   315 DKKNLELKAHVV--EGKLPLNK---LVNMNASELANPDLQEFKEKRDKIILENFIVEVPDKPMYV 374

  Fly  1002 QNKNGTTPVSNVFDPLQAEISNTVFANRHPLDALASPNVPELDMANSVSTVPSAEVIEKPMRESP 1066
            :...|...:.::.:|.:..:.:......|.:|::.| :..:::..:::|..|           ||
Yeast   375 KTHKGDELIEDIAEPQEDILYSKDSIRLHNIDSIDS-DKSKIEQTHAISKEP-----------SP 427

  Fly  1067 AVLVD------SFMVP----------NQLPQEQKFH----------NQLYLGG---NTLVNP--- 1099
            :.:::      :|:.|          |.:...||..          .:||:.|   .|...|   
Yeast   428 STIINEESLNCAFLYPGLGLEFTGYLNYIGASQKLRRDIFKEAIGDGKLYVEGRLPTTTAAPYLK 492

  Fly  1100 ----AQQLQFRQQAPQNANKQNMQTIMSQVVLQTEKR-------------------PEEEQKVVE 1141
                ::.:...|..|.|.::.  :|..:.||...|.:                   |.:..::.|
Yeast   493 EISCSRAILVYQLFPSNDSES--KTTFADVVDSLENKGRIAGIKPKTRYEKDFYIVPSKGGEIPE 555

  Fly  1142 PVTETLNAGTQKTAE---KMRKDE 1162
            .:.:.|.:...:.:|   :|:.||
Yeast   556 ILKDILGSHNDERSERFSRMKSDE 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989 15/51 (29%)
NHP6B 1101..>1237 CDD:227935 14/84 (17%)
HMG 1173..1231 CDD:197700
BYE1NP_012921.3 PHD_Bye1p_SIZ1_like 74..131 CDD:277045 16/60 (27%)
TFS2M 235..354 CDD:128786 29/139 (21%)
SPOC 434..589 CDD:400205 24/148 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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