DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and SET2

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_012367.2 Gene:SET2 / 853271 SGDID:S000003704 Length:733 Species:Saccharomyces cerevisiae


Alignment Length:824 Identity:149/824 - (18%)
Similarity:270/824 - (32%) Gaps:280/824 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   789 MIKSLSTEIKRKRKMRQALGNGKDG--------QLEAAAEEALEKYK--DGMVW----------- 832
            |.|:.|.......|  :.|.|..:|        |.....||||.|::  |..::           
Yeast     1 MSKNQSVSASEDEK--EILNNNAEGHKPQRLFDQEPDLTEEALTKFENLDDCIYANKRIGTFKNN 63

  Fly   833 ------------DGTENAIPEG------FTI--SIND---EGVNILRKKRQRNLQKLGIGGFSVR 874
                        ||..:|..|.      .|:  .:||   ...|..:.:|.:..|...|..|..:
Yeast    64 DFMECDCYEEFSDGVNHACDEDSDCINRLTLIECVNDLCSSCGNDCQNQRFQKKQYAPIAIFKTK 128

  Fly   875 NRGLKKDSEETTAVDQINSLMTMDKKKKIIRKKQ-KNKLIEAYPVYLQEAFFGKPLLEGGELVMA 938
            ::|....:|:....:|    ...:.|.::|.:.: :::||:....:.:..:|  .:|:.||.:.|
Yeast   129 HKGYGVRAEQDIEANQ----FIYEYKGEVIEEMEFRDRLIDYDQRHFKHFYF--MMLQNGEFIDA 187

  Fly   939 DTDSS-------------------------------------DEID----------ASMKVYFTR 956
            ....|                                     :||.          .:.|.|...
Yeast   188 TIKGSLARFCNHSCSPNAYVNKWVVKDKLRMGIFAQRKILKGEEITFDYNVDRYGAQAQKCYCEE 252

  Fly   957 PE------GKS--------PAN-QDTLAVNKSPAK---TVKKVKAE--LKTENKTV---FIQQMP 998
            |.      ||:        |.| .|.|.|..|..|   .:||:..|  :|.||:.:   |:|.:.
Yeast   253 PNCIGFLGGKTQTDAASLLPQNIADALGVTVSMEKKWLKLKKLSGEPIIKNENENINIEFLQSLE 317

  Fly   999 MGIQNKNGTTPVSNVFDPLQAEISNTVFANRHPLDALASPNVPELDMANSVSTVPSAE---VIEK 1060
            :                              .|:|   ||    :|:...:|.:...:   :..|
Yeast   318 V------------------------------QPID---SP----VDVTKIMSVLLQQDNKIIASK 345

  Fly  1061 PMRESPAVLVDSFMVPNQLPQEQKFHNQLYLGGNTLVNPAQQLQFRQQAPQNANKQNMQTIMSQV 1125
            .::....:..||..           |..:.|.|.|..:...:| |..:.||...|.|        
Yeast   346 LLKRLFTIDDDSLR-----------HQAIKLHGYTCFSKMLKL-FITEQPQVDGKGN-------- 390

  Fly  1126 VLQTEKRPEEEQKVVEPVTETLNAGTQKTAEKMRKDEDLGLMATISAVLYANTEHPNLKELFPIW 1190
              :||   |::.|.::.:.:.|....:.|...:...:...::.|:.|             .||..
Yeast   391 --ETE---EDDIKFIKGILDFLLELPKTTRNGIESSQIDNVVKTLPA-------------KFPFL 437

  Fly  1191 NDRCKQILKRWRSLCNEKKAPFLQKAKDNRSALRQRREQNKIPMPPKPQKQEEMGRVWKQPPKLK 1255
            ...|.::|::|......|:.    ..||...|..:..:..::.:||..:...|.||.        
Yeast   438 KPNCDELLEKWSKFETYKRI----TKKDINVAASKMIDLRRVRLPPGWEIIHENGRP-------- 490

  Fly  1256 EDQPNMFVTYNGNAYDMGNY-VGGSAQAASNNPNPHHVMPNVNDNLVIKATMQRTQVHTTAASTL 1319
                   :.||.......:| ..||::..|:..|                    |||::.::|.:
Yeast   491 -------LYYNAEQKTKLHYPPSGSSKVFSSRSN--------------------TQVNSPSSSGI 528

  Fly  1320 KMT--TVDNRL-ELNTAVYGTEPIGDKKL---RNLLQKNSTEPMLMGANSDLFLGNDVMRLGMMQ 1378
            ..|  .:|::. :|:...|  |....|:|   |..|::...|. |......|.|.|:  |..:::
Yeast   529 PKTPGALDSKKHKLSDEEY--ERKKQKRLEYERIALERAKQEE-LESLKQKLKLENE--RKSVLE 588

  Fly  1379 NTPITQNNPMLSISGKSQPSEGRSLEQDVKLGEPQEA-------TSSAVELE---NVGFSDLLGG 1433
            :           |..::...:....|:..||.|.:||       .|.:..||   |..|:..:..
Yeast   589 D-----------IIAEANKQKELQKEEAKKLVEAKEAKRLKRKTVSQSQRLEHNWNKFFASFVPN 642

  Fly  1434 LGEGDDDDLLKSLTSEMGDDFNILEYADPELDVNVLNSLDFDDN 1477
            |       :.|:..|:..|..||.:.|...:.:.....|..|.:
Yeast   643 L-------IKKNPQSKQFDHENIKQCAKDIVKILTTKELKKDSS 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 24/135 (18%)
HMG 1173..1231 CDD:197700 9/57 (16%)
SET2NP_012367.2 AWS 64..119 CDD:197795 9/54 (17%)
SET_SETD2 119..260 CDD:380949 20/146 (14%)
SET 215..695 CDD:225491 110/602 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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