DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lpt and BDF2

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_010213.1 Gene:BDF2 / 851488 SGDID:S000002228 Length:638 Species:Saccharomyces cerevisiae


Alignment Length:577 Identity:111/577 - (19%)
Similarity:192/577 - (33%) Gaps:207/577 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1000 GIQNKNGTTPVSNVFDPLQAEISNTVFAN---RHPLDALASPNVPELDMANSVSTVP-------- 1053
            ||.|.|.::.......|:  .|||.....   .||| .|.....|.|:.......:|        
Yeast    82 GITNLNSSSHAHQTLSPI--SISNASTPESFPEHPL-GLERETEPALEAEMEAEELPPHQSKYLL 143

  Fly  1054 SAEVIEKPMRESPAVL--VD--SFMVPN-----QLPQ-----EQKFHNQLYLGGNTLVNPAQQL- 1103
            |:....|.::::...|  ||  :..:|:     |.|.     |.|....:|       :..:|: 
Yeast   144 SSIKATKRLKDARPFLKPVDPIALNIPHYFNYVQTPMDLSLIETKLQGNVY-------HSVEQVT 201

  Fly  1104 -QFRQQAPQNANKQNMQTIMSQVVLQTEKRPEEEQKVVEPVTETLNAGTQKTAEKMRKDEDL--- 1164
             .|:.......|....::.:|.:..:.:|..|::...:.|.....:| .:||:...:|:||:   
Yeast   202 SDFKTMVDNCLNFNGPESSISSMAKRIQKYFEKKLSAMPPRVLPASA-LKKTSRNRKKNEDMDSP 265

  Fly  1165 -----------------GLMATISAVLYANTEH-PNLKELFPIWND---RCKQILKRWRS----- 1203
                             |....:|......|.| |..|:||.|:.:   :.|.:.|::|:     
Yeast   266 LVIRRSVSTTNDNIGESGNREGVSGGRPKRTIHPPKSKDLFDIYENSKPKSKTLQKKFRTCLKIL 330

  Fly  1204 --LCNEKKA----PFLQKAKDNRSALRQRREQNKIPMPPKPQKQEEMGRVWKQPPKLKEDQPNMF 1262
              |.::|.:    ||||                  |:.|                 :..:.||.|
Yeast   331 KVLMSKKNSDINFPFLQ------------------PVDP-----------------IALNLPNYF 360

  Fly  1263 VTYNGNAYDMGNYVGGSAQAASNNPNPHHVMPNVNDNLVIKATMQRTQVHTTAASTLKMTTVDNR 1327
            .... |..|:|                     .:::||:                ..|..|:|..
Yeast   361 DVVK-NPMDLG---------------------TISNNLM----------------NWKYKTIDQF 387

  Fly  1328 L-ELNTAVYGT---EPIGD------KKLRNLLQKNSTEPMLMGANSDLFLGNDVMRLGMMQNTPI 1382
            : :||...|..   .|.|:      |||:.|...:..|      |.|:.  |::     ..::.:
Yeast   388 VDDLNLVFYNCFQFNPEGNEVHSMGKKLKELFNFHWLE------NQDIL--NEI-----ETDSDL 439

  Fly  1383 TQNNPMLSISGKSQPSEGRSLEQDVKLGEP------QEATSSAVELENVGFSDL----------- 1430
            .::|...|.|...:..:....|.|:.  .|      |:.....|||:.:...:|           
Yeast   440 EEDNYSSSYSSDDEYDDEDINENDIT--NPAIQYLEQKLKKMEVELQQLKRQELSKLSKERKRKH 502

  Fly  1431 LG------GLGEGDDDDLLKSLTSEMGDDFNILEYADPELDVN-----VLNSLDFDD 1476
            ||      ...:...|||.||:|    |..|.|.    :|::|     :.|||..|:
Yeast   503 LGKTLLRRKAMKHSVDDLKKSIT----DKINELS----DLEMNGMIRIIKNSLPADE 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 32/172 (19%)
HMG 1173..1231 CDD:197700 16/72 (22%)
BDF2NP_010213.1 COG5076 55..378 CDD:227408 67/379 (18%)
Bromodomain <344..419 CDD:413371 25/147 (17%)
Lebercilin <472..>537 CDD:406132 17/72 (24%)
BET 521..576 CDD:407211 12/39 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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