DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and cecr2

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:XP_005174419.1 Gene:cecr2 / 799918 ZFINID:ZDB-GENE-131121-533 Length:1502 Species:Danio rerio


Alignment Length:527 Identity:96/527 - (18%)
Similarity:171/527 - (32%) Gaps:192/527 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   998 PMGIQNKNGTTPVSNVFDPLQAEISNTVFANRHPL--DALASPNVPELDMANSVSTVPSAE---V 1057
            ||..|.:  .||..|:.....|       :.:||.  :.:.|.|.....|||....:|||.   .
Zfish   755 PMNHQRQ--PTPSGNMMQEPSA-------SGQHPYNHNMIHSQNSTGFTMANGQFKMPSANSQGP 810

  Fly  1058 IEKPMRESP-------AVLVDSFMVPNQLPQEQ----------KFHNQLYLGGNTLV-----NPA 1100
            :.:.::..|       |.::||   |..:..:|          .|.:....|||.|.     :|.
Zfish   811 VGQKLQGGPQASRLHLASMLDS---PEMIALQQLSASSSHHVGNFQSPQQSGGNPLASAEQSSPE 872

  Fly  1101 QQLQF------------RQQAPQNANKQNMQTIMSQVVLQTEKRPEEEQKVVEPVTETLNAGTQK 1153
            :||..            :..:|::.||.:...| |....::...|...:|..:|...|..|....
Zfish   873 KQLHMPSRDKQHTPVSSKGSSPKSGNKMSTGEI-SLTEAESRSYPSTTEKSEQPSQVTGLASVSS 936

  Fly  1154 TAEKMRKDEDLGLMATISAV---LYANTEHPNLKEL----FPIWNDRCKQILKRWRSLCNEKKAP 1211
            .::::.::||...::.:..:   |.:....||||.:    ||:                 ....|
Zfish   937 PSKELNQNEDKHRLSNLEKIHDQLNSQLGPPNLKSVDGFSFPL-----------------NSPQP 984

  Fly  1212 FLQKAKD----------NRSAL-------RQRREQNKIPMPPK-----PQKQEEMGRVWKQPPKL 1254
            ...|.:|          |:.||       .||:.||   :||:     ||:..|           
Zfish   985 MPHKTQDDIPLNISQQINKHALPQIIQNGSQRQSQN---VPPQILQNIPQQMTE----------- 1035

  Fly  1255 KEDQPNMFVTYNGNAYDMGNYVGGSAQAASNNPN-------PHHVMPNVN--------------- 1297
                 |:...|:.:.          :|...||.:       |.|.||.::               
Zfish  1036 -----NVIHQYHQSV----------SQQIQNNESVRGPQVGPLHGMPQISSQGGQPGVHQPATLS 1085

  Fly  1298 ---------------------DNLVIKATMQRTQVHTTAASTLKMTTVDNRLELNTAVYGTEPIG 1341
                                 |....:.|.::....:||:.  ..:..:.|.:..:..|..:|..
Zfish  1086 SLPPSHPVSHPLAQPSPADQGDQRPCEPTSRKVSDGSTASQ--DGSNANLRTDCTSGQYKQQPFS 1148

  Fly  1342 DKKLRNLLQ------KNSTEPM-LMGANSDLFLGNDVMRLGMMQNTPITQ------NNPMLSISG 1393
            .:....|::      :|.|.|. ..|..|     |:|...|:.:  |..|      ..|:.:.:.
Zfish  1149 PESKPPLVRQEQAPLQNQTPPTHSQGPES-----NNVTHYGISE--PAHQPFGPHHGRPLQTSNH 1206

  Fly  1394 KSQPSEG 1400
            :|..|:|
Zfish  1207 QSYTSQG 1213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 32/171 (19%)
HMG 1173..1231 CDD:197700 16/81 (20%)
cecr2XP_005174419.1 DDT 23..63 CDD:280886
ARGLU 202..366 CDD:291991
Bromo_gcn5_like 403..503 CDD:99941
Med15 675..>1110 CDD:255446 75/413 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.