DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and setd1b

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_001072649.1 Gene:setd1b / 780106 XenbaseID:XB-GENE-5842344 Length:1956 Species:Xenopus tropicalis


Alignment Length:924 Identity:172/924 - (18%)
Similarity:302/924 - (32%) Gaps:331/924 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   723 GNEDSLAITPQGSKPFVHITASSGPSFDSKSGAERNHPTLSGDMPESAPEALHWIDGVCLSE-SG 786
            |.|:.|....:.:.......|....|.:|:..:|....:.|.:..|...|....:.|...|| ..
 Frog  1045 GKEEDLVSEEEDTTSVASSRAEMDSSDESEESSEYESSSDSDEKEEEDDEEEELVFGDDQSEDQD 1109

  Fly   787 LGMIKSLSTEIKR---KRKMRQALGNGKDGQLEAAAEEALEKYKDGMVWDGTENAIPEGFTISIN 848
            ||....:.|:.:.   :..:.:.....|.|.:|  .|:.::|.::.:....|:..:         
 Frog  1110 LGQEYEVETDREEDFFRENLSECSSLPKAGDVE--LEDEMQKVEEDVARQTTQETL--------- 1163

  Fly   849 DEGVNILRKKRQRNLQKLGIGGFSVRNRGLKKDSEETTAVDQINSLMTMDKKKKIIRKKQK---- 909
                         :|:|..:....|.::..|:|:     :|::..|..:..::::.::.:|    
 Frog  1164 -------------HLRKKNLDVPLVESKECKQDT-----LDKVEKLFAVPMQEEVFKEHEKAPSP 1210

  Fly   910 ----NKLIEAY--PVYL---------QEAFFGKPL--------------LEGGELVMADTDSSDE 945
                .:.||..  ||.|         ||....:||              ||..:|.:..|..:.|
 Frog  1211 MNEEEEYIELQLEPVPLVPEGAAPAAQEPVIIRPLTPTGAFGETGPVLKLEEPKLQVNLTQFATE 1275

  Fly   946 IDASMKVYFTRPEGKSPANQDT-------LAV-----------NKS------PAK-----TVKKV 981
            .:   ::|...|...:.|:.||       |.|           ||.      |.|     ||.|:
 Frog  1276 DE---ELYPRTPGRDTAAHSDTEVTFQPGLKVAPSSLPFLPSHNKEEECLLPPEKHAGHLTVTKM 1337

  Fly   982 KAE---LKTENKTVFIQQMPMGIQNKNGTTPVSNVFD-PLQAEISNTVFANRH----PLDALAS- 1037
            .:|   .:|..:.:.::...:|......|.|.:...| ||..  |:....:.|    |...|:. 
 Frog  1338 LSEEDLPRTPGRDIVVKSSHLGKSQSTETVPATPGSDAPLTG--SSLTLTSPHIPGSPFSYLSQS 1400

  Fly  1038 --------PNVPELDMANSVSTVPSAEVI-------EKPMRESPAVLVDSFMVP-------NQLP 1080
                    |..|..|. |...|.|.:..|       :||..:.|.  ..||..|       |.:|
 Frog  1401 PGIINSGIPRTPGRDF-NFTPTFPESNSIFPCHPSGKKPSVDEPD--EKSFKEPTSASLTMNSVP 1462

  Fly  1081 QEQKF--------HNQLYLGGNTLVN---PA----------QQLQF------------------- 1105
            ....|        |..:.||.:.|.:   ||          .:.:|                   
 Frog  1463 SPIPFASPPRGLPHMDIRLGADDLESSDTPAYLSDKLLSEESECEFTKVHLTSTDESAPSPPLPP 1527

  Fly  1106 -------RQQAPQNAN----KQNMQTIMSQVVLQTE---------KRPEEEQKVVEPVTETLNAG 1150
                   |.:.|.:|:    ::|.:|  |..|..:|         .:|:....:.:|....|:  
 Frog  1528 AEKRKGDRSKKPLSAHEFETEKNYET--SSAVAMSEGALGKQMFIGQPDAVSGIKDPAAVPLD-- 1588

  Fly  1151 TQKTAEKMRKDEDLGLMATISAVLYANTEHPNLKELFPIWNDRCKQILKRWRSLCNEKKAPFLQK 1215
                   .|.|.           |..||.|..:.:..|:     |::..:|..:..|::.  :.|
 Frog  1589 -------FRNDS-----------LSENTVHEPIIQKVPL-----KELENQWNEVLKEEED--ITK 1628

  Fly  1216 AKDNRSALRQRR--EQNKIPMPP--------KPQKQ-EEMG---RVWKQPPKLKEDQPNMFVTY- 1265
            .|.:|::....|  |.:.:|.|.        ||:.: |||.   .:|..... .||...|.:|| 
 Frog  1629 HKKSRNSRHNNRYDEFSTVPSPEFSPPRAMFKPRSEFEEMTILYDIWNGGID-DEDIKYMCITYD 1692

  Fly  1266 ------NGNAYDMGNYVGGSAQAASNNPNPHHVMPNVNDNLVIKATMQRTQVHTTAASTLKMTTV 1324
                  ||                         |..:||.|.:        .|.           
 Frog  1693 RLLQQDNG-------------------------MDWLNDTLWV--------YHP----------- 1713

  Fly  1325 DNRLELNTAVYGTEPIGDKKLRNLLQKNSTEPMLMG-ANSDLFL---GNDVMRLGMMQNTPITQN 1385
                  :|:||..:   .||..:.|:::.|     | |.|:.:.   ..|.::. ::.|..:|:.
 Frog  1714 ------STSVYSPK---KKKRDDGLREHVT-----GCARSEGYYKIDKKDKLKY-LINNRSLTEE 1763

  Fly  1386 NPMLSISGKSQPSEGRSLEQDVKLGEPQEATSSAVELENVGFSDLLGGLGEGDDDDLLKSLTSEM 1450
            .| :...|||.|:            :||.:|.:..|..:.. ..||.......|.||||      
 Frog  1764 LP-IDTQGKSIPA------------QPQASTRAGSERRSEQ-RRLLSSFTGSCDSDLLK------ 1808

  Fly  1451 GDDFNILEYADPEL 1464
               ||.|::...:|
 Frog  1809 ---FNQLKFRKKKL 1819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 29/184 (16%)
HMG 1173..1231 CDD:197700 13/59 (22%)
setd1bNP_001072649.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..46
RRM_Set1B 119..211 CDD:240993
RRM <127..304 CDD:223796
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 226..478
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 502..637
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 662..696
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 926..1148 20/104 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1341..1386 8/46 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1420..1464 11/45 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1512..1553 4/40 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1627..1655 7/27 (26%)
N-SET 1669..1807 CDD:288597 39/211 (18%)
SET <1732..1956 CDD:225491 27/117 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1766..1790 8/35 (23%)
SET 1817..1939 CDD:214614 1/3 (33%)
PostSET 1940..1956 CDD:214703
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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