DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lpt and Brd3

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_001107046.1 Gene:Brd3 / 67382 MGIID:1914632 Length:743 Species:Mus musculus


Alignment Length:571 Identity:105/571 - (18%)
Similarity:192/571 - (33%) Gaps:191/571 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   873 VRNRGLKKDSEETT----AVDQINS----LMTMDKKKKIIRKKQKNKLIEAYPVYLQEAFFGKPL 929
            |:.:|:|:.::.||    |:....|    .::..|:.|::.:::..               |:|:
Mouse   236 VKKKGVKRKADTTTPTTSAITASRSESPPPLSEPKQAKVVARRESG---------------GRPI 285

  Fly   930 ------LEGGE--------------LVMADTDSSDEIDASMKVY---FTRP-EGKSPANQDTLAV 970
                  ||.||              |...|:...:.:......|   |.:| :.::....|...:
Mouse   286 KPPKKDLEDGEVPQHAGKKGKLSEHLRHCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDI 350

  Fly   971 NKSP--AKTVKKVKAELKTENKTVFIQQMPMGIQNKNGTTPVSNVFDPLQAEISNTVFANRH--- 1030
            .|.|  ..|||:.....:..:...|...:.:...|.....|..:....:..::.: ||..|.   
Mouse   351 IKHPMDLSTVKRKMDSREYPDAQGFAADIRLMFSNCYKYNPPDHEVVAMARKLQD-VFEMRFAKM 414

  Fly  1031 PLDALASPNVPELDMANSVSTVPSAEVIEK---PMRESPAVLVDSFMVPNQLP--------QEQ- 1083
            |.:.:.:|.:|          .|:|.::.|   ..|.|.....||....::..        ||| 
Mouse   415 PDEPMEAPALP----------APTAPIVSKGAESSRSSEESSSDSGSSDSEEERATRLAELQEQT 469

  Fly  1084 ---KFHNQLY-LGGNTLVNPAQQLQFRQQAPQNANKQNMQTIMSQVVLQTEKRPEEEQKVVEPVT 1144
               .|.:||. :....|....:||....|||.|..|:           :.||:.:|::|      
Mouse   470 GCGAFQDQLLNVSSVQLKAVHEQLAALSQAPVNKPKK-----------KKEKKEKEKKK------ 517

  Fly  1145 ETLNAGTQKTAEKMRKDEDLGLMATISAVLYANTEHPNLKELFPIWNDRCKQILKRWRSLCNEKK 1209
            :..:...:|...|.:.:|:....|..:|                      ||        ..:||
Mouse   518 KDKDKDKEKEKHKAKSEEEKKAKAAPAA----------------------KQ--------AQQKK 552

  Fly  1210 APFLQKAKDNRSALRQ--------------RREQNKIPMPPKPQKQ----------EEMGRV--- 1247
            || .:||....:|.||              ..|:..:||....::|          |::|||   
Mouse   553 AP-TKKANSTTTASRQLKKGGKQASASYDSEEEEEGLPMSYDEKRQLSLDINRLPGEKLGRVVHI 616

  Fly  1248 -WKQPPKLKEDQPNM----FVTYNGNAY-DMGNYVGGSAQAASNNPNPHHVMPNVNDNLVIKATM 1306
             ..:.|.|::..|:.    |.|...... ::..||....|.....|               .:|.
Mouse   617 IQSREPSLRDSNPDEIEIDFETLKPTTLRELERYVKSCLQKKQRKP---------------LSTS 666

  Fly  1307 QRTQVHTTAASTLKMTTVDNRLELNTAVYGTEPIGDKKLRNLL-QKNSTEP 1356
            .:.|    ||.:.:....:.:.||           :|:|:::. |.||.:|
Mouse   667 GKKQ----AAKSKEELAQEKKKEL-----------EKRLQDVSGQLNSKKP 702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 30/149 (20%)
HMG 1173..1231 CDD:197700 12/71 (17%)
Brd3NP_001107046.1 Bromo_Brdt_I_like 33..139 CDD:99929
Bromo_Brdt_II_like 310..411 CDD:99930 16/101 (16%)
BET 589..653 CDD:374956 14/63 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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