DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and Spocd1

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:XP_017175994.1 Gene:Spocd1 / 622480 MGIID:3652045 Length:1015 Species:Mus musculus


Alignment Length:546 Identity:106/546 - (19%)
Similarity:174/546 - (31%) Gaps:205/546 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   828 DGMVWDGTENAIPEGFTISINDEGVN--------ILRKKRQRNLQKLGI-------GGFSVRNRG 877
            :|||       .||..|:|  .||::        :|...| |..:|.||       .|||:| .|
Mouse    71 EGMV-------SPEDPTLS--KEGLSAKGPPPSPVLPPFR-RKCRKCGICPQEEEKSGFSLR-FG 124

  Fly   878 LKKDSEETTAVDQINSLMTMDKKKKIIRKKQKNKLIEAYPVYLQEAFFGKPLLEGGELVMADTDS 942
            .:.|.:....                           |.|    |||.|.|.|    |...||:.
Mouse   125 QRPDGDPPEC---------------------------ASP----EAFAGPPRL----LSSKDTEP 154

  Fly   943 SD--------EIDASMKVYFTRPEGKSPANQDTL-------------AVNKSPAKTVKKVKAELK 986
            .:        .::..::......:|.:|.:.|.|             .|.:.|.:: ..:..|:.
Mouse   155 GEPGGSWVECAVETEVENMLFSKDGVAPDSLDHLFEFPGLFGGEPLSLVTQEPLQS-PALYPEVL 218

  Fly   987 TENKTVFIQQMPMGIQNKNGTTPVSNVFDPLQAEISNTVFANRHPLD-ALASPNVPELDMANSVS 1050
            ||:.|...:..|..:....||.|     ||:..| ......:|..|: .|::|       |||.:
Mouse   219 TEDSTDQQEVQPAFVVGSPGTPP-----DPVGPE-DKAQSGSRMELEQGLSAP-------ANSCA 270

  Fly  1051 TVPS---------------AEVIEKPMRESP----------AVLVDSFMVPNQLPQEQKFHNQLY 1090
            :.|.               ..|.::|. .||          |...|...:..::|:..|....:|
Mouse   271 SSPEPLGGLDGAPLEQRRPTHVKKRPW-TSPDDSSQDHAEGASKKDFPRLEARVPRGVKTVYYVY 334

  Fly  1091 LG-GNTLVNPAQQLQ---------------FRQQAPQNANKQNMQTIMSQVVLQTEKRPEEEQKV 1139
            .| |..||..|...|               .|::.|..|:....|:..|    :||.....:|:.
Mouse   335 TGSGIRLVGAASSSQPGQIEPLEELDTNSARRKRRPTTAHPTPCQSDPS----ETENAEPHQQRA 395

  Fly  1140 VEPVTE---TLNAGTQKTAEK-----------------MRKDEDLGLMATISAVLYANTEHPNLK 1184
            .:|..:   .|:||.:.|..:                 :|:||...:...|...|:..|:..||:
Mouse   396 EDPGEQGMTPLDAGVRSTVVRAMQEVLWTRAQELPDLALREDEVEAIAEGIEEALFHLTQDTNLR 460

  Fly  1185 E-------LFPIWNDR--------------------------CKQILKRWRSLCNEKKAPFLQKA 1216
            .       ||.:.:.|                          ..:.|.|||.....|....::  
Mouse   461 YKNKYRSLLFNLRDPRNVDLFLKVAHCDVTPNNLVQMSSIQLAPKELSRWRDQEERKGLDIIE-- 523

  Fly  1217 KDNRSALRQRREQNKIPMPPKPQKQE 1242
                   :|::|..::|......|.|
Mouse   524 -------QQQKELYRLPASKLTHKGE 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 33/203 (16%)
HMG 1173..1231 CDD:197700 14/90 (16%)
Spocd1XP_017175994.1 TFIIS_M 410..520 CDD:400056 17/109 (16%)
SPOC 681..825 CDD:400205
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.