DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lpt and brd4

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_001104751.1 Gene:brd4 / 570531 ZFINID:ZDB-GENE-030131-267 Length:1444 Species:Danio rerio


Alignment Length:790 Identity:146/790 - (18%)
Similarity:265/790 - (33%) Gaps:189/790 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   729 AITPQGSKPFVHITASSGPSFDSKSGAERNHPTLSGDMPESAPEALHWIDGVCLSESGLGM---- 789
            |:.|||.................|.|.:.|.   |...|.:||..|..:.|:. :|..||:    
Zfish   584 ALKPQGKPKNKDPLPKKSKKLSKKEGGKSNR---SMAPPGAAPPTLQPVPGLD-TEEDLGLTGGA 644

  Fly   790 ----------IKSLSTEIKRK--------------------RKMRQALGNGKDGQLEAAAE---- 820
                      .|.:|.|.||:                    :....:|.|....::|...|    
Zfish   645 AMAGMAAGEKCKPMSYEEKRQLSLDINKLPGDKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKP 709

  Fly   821 ---EALEKYKDGMVWDGTENAIPEGFTISINDEGVNILRKKRQRNLQKLGIGGFSVRNRGLKKDS 882
               ..||:|....:....:.|:||                   ::::.:.    :|:.:|...||
Zfish   710 STLRELERYVSSCLRKKKKPAVPE-------------------KSMEAIS----AVKTKGTSSDS 751

  Fly   883 EETTAVDQINSLMTMDKKKKIIRKKQKNKLIEAYPVYLQEAFFGKPLLEGGELVMADTDSSDEID 947
            ..::   :.:|..:.|.:..:..|.:|....|....:.|....|.||.:     :.....:..:.
Zfish   752 GSSS---ESSSSESEDSETGMASKPKKRGRGEGKKAHHQTTAPGMPLPQ-----VPLQPQTPALQ 808

  Fly   948 ASMKVYFTRPEGKSPANQDTLAVNKSPAKTVKKVKAELKTENKTVFIQQMPMGIQNKNGTTPVSN 1012
            .|:::...:|:..|||     |....|...::..:......:.......:|....:.:...|...
Zfish   809 PSIQLKQQQPQHPSPA-----AYMPPPVTALEPSQLLENPFDPLAHFMHLPHHANDSSSPAPPHL 868

  Fly  1013 VFDPLQAEISNTV--FANRHPLDALASPNVPELDMANSVSTVPS------AEVIEKPMRESPAVL 1069
            ...|....:|...  |.|:||:       :|...:.|::...||      |.:..||:::|.:  
Zfish   869 NAHPPGGPVSPETHPFLNQHPI-------LPSPALHNALPQQPSRPSNRAAPLPPKPLQQSTS-- 924

  Fly  1070 VDSFMVPNQLPQEQKFHNQLYLGGNTLVNPAQQLQFRQQAPQNANKQNMQTIMSQVVLQTEKRPE 1134
                   .|.|..|:          ||| |.||||.:||.|....:|::.........|...|| 
Zfish   925 -------QQQPPPQQ----------TLV-PPQQLQPQQQQPAPPQQQHLPHHPLHAPQQMRPRP- 970

  Fly  1135 EEQKVVEPVTETLNAGTQKTAEKMRKDEDLGLMATISAVLYANTEHPNLKELFPIWNDRCKQILK 1199
                 :.|.|.|..........:|..::|...:.:.|..:|.....|:..:..|         ..
Zfish   971 -----LSPPTLTPQGLLSSQPPQMLLEDDEEPVPSKSLPMYLQHLQPHRLQATP---------TS 1021

  Fly  1200 RWRSLCNEKKAPFLQKAKDNRSALRQRREQNKIPMPPKPQKQEEMGRVWKQPPKLKEDQPNMFVT 1264
            ..:||.:..:.|      ...|.|:..:.|:.:|.|..|.:.:    |..|.|...:..|.:...
Zfish  1022 LMQSLQSRPQPP------GQPSLLQSVQVQSHLPPPQLPVQTQ----VQPQQPAPHQPSPQLSQH 1076

  Fly  1265 YNGNAYDMGNYVGGSAQAASNNPNPHHV-MPNVNDNLVIKATMQRTQVHT----TAASTLKMTTV 1324
            ...:...:| :..|..|.|...|..|.| ||:.....:|: ..|.||.|:    .|.|.......
Zfish  1077 QARHMQQLG-FPQGPLQTAQTQPGQHKVSMPSTKAQQIIQ-QQQATQHHSPRQHKADSYNSAHLR 1139

  Fly  1325 DNRLEL--------NTAVYGTEPIGDKK-----------LRNLLQKNSTEPMLMGA--------- 1361
            ||...|        ..::....|..|||           ::.  :|....|::.|.         
Zfish  1140 DNPSPLMMHSPQIPQYSLVHQSPSQDKKEPQRGPSALGGIKE--EKLPPSPVMRGEPFSPAMRPE 1202

  Fly  1362 ------NSDLFLGNDVMRLGMMQNTPITQNNPMLSISGKSQPSEGRSLEQDVKLGEPQEATSSAV 1420
                  :.....|:...|..|   .|:..:.|::..|.:|.|..  |::...|..:..:..|:..
Zfish  1203 SHKHPDSKPTMPGHSQQRADM---KPLEMSRPVIRSSEQSGPPP--SMQDKEKFKQEPKTPSAPK 1262

  Fly  1421 ELENVGFSDL 1430
            ::::|.|.::
Zfish  1263 KVQDVKFKNM 1272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 28/135 (21%)
HMG 1173..1231 CDD:197700 9/57 (16%)
brd4NP_001104751.1 bromodomain 1; BD1 40..152
Bromo_Brdt_I_like 43..149 CDD:99929
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 154..217
bromodomain 2; BD2 356..473
Bromo_Brdt_II_like 363..464 CDD:99930
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 492..523
NPS region. /evidence=ECO:0000250 498..517
BID region. /evidence=ECO:0000250 538..610 5/25 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 540..645 16/64 (25%)
ET domain 654..729 12/74 (16%)
BET 657..721 CDD:293640 11/63 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1020..1422 52/272 (19%)
C-terminal (CTD) region. /evidence=ECO:0000250 1126..1444 25/154 (16%)
BRD4_CDT <1419..1444 CDD:293710
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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