DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lpt and pbrm1l

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:XP_005168819.1 Gene:pbrm1l / 445141 ZFINID:ZDB-GENE-010501-3 Length:1657 Species:Danio rerio


Alignment Length:627 Identity:117/627 - (18%)
Similarity:221/627 - (35%) Gaps:151/627 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   777 IDGVCLSESGLGM-----IKSLSTEIKRKRKMRQALGNGKDGQLEAAAEEALEKYKDGMVWDGTE 836
            :.|:.|||..|.:     ......:||....::|.....|:|..||.  |.:|.....|..:...
Zfish   367 VQGLLLSEPFLQLPSRREYPDYYHQIKNPISLQQIREKMKNGDYEAV--EQIEADLSVMFENARR 429

  Fly   837 NAIPEGFTISINDEGVNILRKKRQRNLQKLGIGGFSVRNRGLKKDSEETTAVDQINSLMTMDKKK 901
            ..:|            |....||.:.||.:    ...:.|..:.|.|..  |...||.:...|||
Zfish   430 YNMP------------NSTIYKRAQRLQLI----MQQKKREFRDDDEGD--VSTANSDVGSSKKK 476

  Fly   902 KIIRKKQKNKLIEAYPVY-----------LQEAFFGKPLLEG----GELVMADTD---------- 941
            ...:..:||::...|.|.           |.:.|..|||.:.    .:::....|          
Zfish   477 SHKKSAKKNRMKMLYAVLTDAREPGSGRRLCDLFMVKPLKKDYPDYYKIIQDPMDMRTIENNIRT 541

  Fly   942 ----SSDEIDASMKVYFTRPE---------------------------GKSPANQDT----LAVN 971
                :.|.:...||:.|....                           |.:|...|.    |.:.
Zfish   542 ERYNNEDALMEDMKLMFRNARHYNEEGSQVYNDANVLEKMVKDKQKELGPAPEEDDVGSPKLKLR 606

  Fly   972 KSPAKTVKKVKAELKTENKTVFIQQMPMGIQN--KNGTTPVSNVF--DPLQAEISNTVFANRHPL 1032
            :| ...|...||.::|......:.::...::|  .|....:|.||  .|.::|:.:...|.:.|:
Zfish   607 RS-GVAVSPKKARIQTTPLQQKLSELYEAVRNFTDNRGRRLSTVFLRLPSRSELPDYYAAIKRPI 670

  Fly  1033 DA------LASPNVPELD--------MANSVSTVPSAEVIEKPMRESPAVLVDSFMVPNQLPQEQ 1083
            |.      :......::|        |.|:..|....|.:   :.....:|..:|:...:..:|:
Zfish   671 DMERIRSYMVQGRYQDVDSLAEDFILMFNNACTYNEPESL---IYRDALLLHRAFLEARRRIEEE 732

  Fly  1084 KFHNQLYLGGNTLVNPAQQ----LQFRQQAPQNANKQNMQTIMSQVVLQTEKRPEEEQKVVEPVT 1144
            :..::..|||.::.:..::    |.......|:...:.....:::|.......|::....:|.:.
Zfish   733 ENGDEGGLGGLSVASLVRELIRNLFVSMMGHQDDEGRCYSDSLAEVPAIDPANPDDPPLTLEIIR 797

  Fly  1145 ETLNAGTQK-----------TAEKMRKDEDLGLMATISAVLYANTEHPNLKELF-PIWNDRCK-- 1195
            ..:::|..:           ..||.|:     |..|.|.:...:.|   |:..| .|.::.||  
Zfish   798 NNVDSGRYRRLDVFQEHVFEVLEKARR-----LNRTDSEIFEDSVE---LQHFFVKIRDELCKNG 854

  Fly  1196 QIL---------KRWRS-LCNEKKAPFLQKAKDNRSALRQRREQNKIPMPPKPQKQEEMGRVWKQ 1250
            :||         |...| :..||:....|:.::::  |::..::..:|...|.:...|.|: |  
Zfish   855 EILLTPALSYTSKHLHSDIDQEKREKLPQEIEEDQ--LKREEDKKALPEGDKAEGPAEGGQ-W-- 914

  Fly  1251 PPKLKEDQPNMFVTYNGNAYDMGNYVGGSAQAASNNPNPHHV 1292
             |...:...:...::..|.|.:|:||  ..|.|..|..||.|
Zfish   915 -PSGSQSSYSQDCSFENNTYSIGDYV--YVQPAEANLQPHVV 953

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 27/163 (17%)
HMG 1173..1231 CDD:197700 14/70 (20%)
pbrm1lXP_005168819.1 Bromo_polybromo_I 43..152 CDD:99954
Bromo_polybromo_II 184..286 CDD:99948
Bromo_polybromo_III 352..452 CDD:99951 21/102 (21%)
Bromo_polybromo_IV 485..585 CDD:99949 13/99 (13%)
Bromo_polybromo_V 624..723 CDD:99946 16/101 (16%)
Bromo_polybromo_VI 746..853 CDD:99956 17/114 (15%)
BAH_polybromo 933..1049 CDD:240068 10/23 (43%)
BAH_polybromo 1123..1241 CDD:240068
HMG-box 1346..1408 CDD:238037
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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