DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and Brd8

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_651685.2 Gene:Brd8 / 43460 FlyBaseID:FBgn0039654 Length:872 Species:Drosophila melanogaster


Alignment Length:783 Identity:145/783 - (18%)
Similarity:257/783 - (32%) Gaps:215/783 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   698 DNN---VYKCFKCRCSTRSTNSLADAKFGNEDSLAITPQGSKPFVHITASSGPSFDSKSGAERNH 759
            |.|   |.:..|..|...|:|..||  :.::.:.|:........|..|.....|.:|.:|.    
  Fly    36 DQNWITVSRTLKTICGNGSSNRPAD--WFSQKNCAMQYGNLLESVEATKRKKRSSESSAGV---- 94

  Fly   760 PTLSGDMPESAPEALHWIDGVCLSESGLGMIKSLSTEIKRKRKMRQALGNGKDGQLEAAAEEALE 824
                     |:|..:.....:.|..    :.:....|||.:.:..|........::|:...:|:.
  Fly    95 ---------SSPATVETPTELLLRR----LTEERQAEIKAQMRQDQETYRRIQREIESLQSDAVT 146

  Fly   825 KYKDGMVWDGTENAIPEGFTISINDEGVNILRKKRQRNLQKLGIGGFSVRNRGL--KKDSE--ET 885
            :.:...:|...|.. .|...|    |.:.:..:.|:|..:|..:.. :.||..|  |:.::  :|
  Fly   147 EQELQDMWLEIEKE-QEARRI----EEMKLENRMREREQRKKDLAS-NWRNSSLAVKRSNQAADT 205

  Fly   886 TAVD-QINSLMTMDKKKKIIRKKQKNKLIEAYPVYLQEAFFGKPLLEGGELVMADTDSSDEIDAS 949
            |:|| .:..:.|....|:           :..|         .|||.  .|:.:.|.::..... 
  Fly   206 TSVDMDVEDINTSGNGKQ-----------QTGP---------SPLLT--SLLKSPTGNAPATPT- 247

  Fly   950 MKVYFTRPEGKSPANQDTLAVNKSPAKTVKKVKAELKTENKTVFIQQMPMGIQNKNGT------T 1008
                   |.|.:||...|.:|.::.|.|:    ..|.|...:..:...|: |..|:.|      .
  Fly   248 -------PGGAAPAAGGTGSVARATAPTI----TSLLTSGPSSAVANQPV-ITMKSPTDAAFMSR 300

  Fly  1009 PVSNVFDPLQAEISNTVFANRHPLDALASPNVPELDMANSVSTVPSAEVIEKPMRESPAVLVDSF 1073
            |::.   |..:|.|.|....|.|..|     .|.|.|           ::||.|..:.|....|.
  Fly   301 PITG---PPASEASTTPTLERSPSQA-----APTLSM-----------LLEKNMAAAKANESGSL 346

  Fly  1074 MVPNQLPQEQKFHNQLYLGGNTLVNPAQQLQFRQQAPQNANKQNMQTIMSQVVLQTEKRPEEEQK 1138
            :.|..             .||           ::|....|......|..|.     |..|.|.| 
  Fly   347 VKPEG-------------SGN-----------QEQGVDEATSSAAGTADSD-----EADPNEAQ- 381

  Fly  1139 VVEPVTETLNAGTQKTAEKMRKDEDLGLMATISAVLYANTE----HPNLKELFPIWNDRCKQI-- 1197
                :.|..     |..:::..|.|:.:.:.|...:..|.:    .|:        ||:.:.|  
  Fly   382 ----LLEVF-----KNIDQIIDDIDIDMASVIDDEILKNVDDVVASPS--------NDKAEVIDF 429

  Fly  1198 ------LKRWRSLCNEKKAPFLQKAKDNRSALRQRREQN-KIPMPP-KPQKQEEMGRVWKQPPKL 1254
                  |||.:|    |.:|...|.|.....:....:.| .||:.. ..|:.::.|:...:..:.
  Fly   430 EDKLDALKREQS----KSSPASDKPKSVELVIGSSDDSNDNIPLAAVASQESKDRGQSGGESTRG 490

  Fly  1255 KEDQPNMFVTYNGNAYDMG---NYVGGSAQAASNNPNPHHVMPNVNDNLVIKATMQRTQVHTTAA 1316
            .||..:..:|......::|   ..:..|::..:.:|..........|:|                
  Fly   491 TEDAESEPLTSEVAVEEIGETITIISTSSEDTAGSPPTKMEEDGATDSL---------------- 539

  Fly  1317 STLKMTTVDNRLELNTAVYGTEPIG---DKKLRNLLQKNSTEPMLMGANSDLFLGNDVMRLGMMQ 1378
             ..|....:::.|..::..|....|   |:.  .|:...:|......:..|. .|..|    .||
  Fly   540 -PKKEDAAEDKSEQESSSQGQNKAGGSTDEP--ELIDHQATREAQSKSGKDT-AGKPV----TMQ 596

  Fly  1379 NTPITQNNPM-------------LSISGK--SQPSEGRSLEQDVKL------------GEPQEAT 1416
            ....||:.|:             |:.|.|  ..|...::....:||            |.||..:
  Fly   597 EKTTTQSAPVPVDLHDTDEESSSLTDSSKHDDHPRSAKAKPPALKLALDDSKSELELSGTPQPPS 661

  Fly  1417 SSA 1419
            :.|
  Fly   662 APA 664

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989 3/11 (27%)
NHP6B 1101..>1237 CDD:227935 29/149 (19%)
HMG 1173..1231 CDD:197700 14/70 (20%)
Brd8NP_651685.2 PaaSYMP <105..188 CDD:291408 15/92 (16%)
PHA03249 402..>582 CDD:223023 34/210 (16%)
Bromo_brd8_like 729..833 CDD:99939
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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