DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lpt and NSD

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_733239.1 Gene:NSD / 43351 FlyBaseID:FBgn0039559 Length:1427 Species:Drosophila melanogaster


Alignment Length:612 Identity:114/612 - (18%)
Similarity:197/612 - (32%) Gaps:242/612 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   364 STCDEEADLTAYHKKKEQNPDY--------DYVCPNCKSNSSGPGSSQQTIDSIVLSAMDS--SS 418
            |..:...|.:||     :||::        :||..|         .|.:.::.::||.:.:  |.
  Fly   621 SQTETTVDSSAY-----ENPEFRQLLSAVMEYVMMN---------RSDEKVEKVLLSVVSNIWSL 671

  Fly   419 EQLSLKEIELDPLEGK------------------------------------PTMDPSSD----- 442
            :|:.|:|:|.|...|:                                    |.:.||:.     
  Fly   672 KQIQLRELERDLASGEIEEPLGSSVVGRGSGVGTIKRLSNRLMTMMVRRSMTPVVTPSTTPAPSE 736

  Fly   443 ---ELHKLPTGKKKVCLTSVRGRSGKFVLHRMGVMSQINKKRSTRGKGRQ--------------- 489
               .|.:.|..||.|      .|..:.|:..   :.|::.|...||..|:               
  Fly   737 PDRRLSEPPKTKKPV------NRPIEEVIED---ILQLDSKYLFRGLSREPICKYCYQAGSDLVR 792

  Fly   490 --------------------LALPTISSDRCL-----SRSMETD---LTSDKK-------LLLCS 519
                                ..:|.|.|.:.|     |:|...|   :|:|.|       .|:| 
  Fly   793 CSRTCSSWLHADCLERKVTGAPMPKIGSRKALVIPPTSKSPSPDEDHVTADAKEVVAVGTSLVC- 856

  Fly   520 ARDKFIQAQDICVMCGSLGIESDSV------------------MITCAQ--CGQCYHPYCAGVKP 564
             .:..:...:.||:|..  :||.:|                  ::||:|  ||:.:|..|....|
  Fly   857 -HECNVGEPEGCVICHQ--VESPAVPSTPRKEDSSSHTPIEDKLLTCSQPMCGKRFHTSCCKYWP 918

  Fly   565 SRGILQKGWRCLDCTVCEGC------GK--KNDEARLLLCDECDISYHIYCVNPPLETVPTGNWK 621
            .....:...|| ...||..|      ||  :...::|..|..|..:||...     :.:|.|...
  Fly   919 QASSSKHSARC-PRHVCHTCVSDDPSGKFQQLGSSKLAKCVRCPATYHQLS-----KCIPAGTQM 977

  Fly   622 CSFCTLCQKCGRNPTEKSEFGDSNMLECPSCTSQSSCPVCKVSYSNGEMIIQCEHCELWAHFHCD 686
            .:...:.  |.|:...|:: ...|:|.|..|.            ..||::. ||.|.:..|.||.
  Fly   978 LNTTNII--CPRHNIAKAD-AHVNVLWCYICV------------KGGELVC-CETCPIAVHAHCR 1026

  Fly   687 SVNAQLTIDHYDNNVYKCFKCRCSTRST-NSLADAKFGN------------------------ED 726
            ::..:      .|..|.|.:|....... ..:..|||.|                        |:
  Fly  1027 NIPIK------TNESYICEECESGRLPLYGEIVWAKFNNFRWWPAIILPPTEVPSNILKKAHGEN 1085

  Fly   727 SLAITPQGS---------KPFVHITASSGPSFDSKSGAERNHPTLSGDMPESAPEALHWIDGVCL 782
            ...:...|:         :.:::|...:|....:||...||:.|                 ||..
  Fly  1086 DFVVRFFGTHDHGWISRRRVYLYIEGDTGDGHKTKSQLFRNYTT-----------------GVEE 1133

  Fly   783 SESGLGMIKSLSTEIKRKRKMRQALGN 809
            :...|.:||:.    ::::.|.:..||
  Fly  1134 ASRFLPIIKAR----RQEQDMERQSGN 1156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600 8/35 (23%)
PHD4_KMT2C_like 530..578 CDD:276987 16/67 (24%)
PHD5_KMT2C_like 580..625 CDD:276988 12/52 (23%)
PHD6_KMT2C_like 657..707 CDD:276989 11/49 (22%)
NHP6B 1101..>1237 CDD:227935
HMG 1173..1231 CDD:197700
NSDNP_733239.1 MSH6_like 391..508 CDD:99898
PHD2_NSD 867..932 CDD:277040 16/67 (24%)
PHD3_NSD 933..988 CDD:277041 13/61 (21%)
PHD4_NSD 1001..1041 CDD:277042 13/58 (22%)
WHSC1_related 1047..1141 CDD:99899 16/110 (15%)
AWS 1183..1233 CDD:197795
SET 1234..1354 CDD:214614
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
11.030

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