DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and pps

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_001247075.1 Gene:pps / 41524 FlyBaseID:FBgn0082831 Length:2018 Species:Drosophila melanogaster


Alignment Length:1074 Identity:206/1074 - (19%)
Similarity:346/1074 - (32%) Gaps:318/1074 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   396 SSGPGSSQQTIDSIVLSAMDSSSEQLSLKEIELDP-LEGKPTMDPSSDELHKLPTGKKKVCLTSV 459
            |:.||    |:|:||  :|.:|.|.:.:.:::... |....::...:..:..||.    .|.|..
  Fly   726 STEPG----TLDAIV--SMPTSIEPVDVPQVQAHTNLLPNASLTEPAQSMTSLPI----ACSTPS 780

  Fly   460 RGRSGKFVLHRMGVMSQINKKRSTRGKGRQLALPTISSDRCLSRSMETDLTSDKKLLLCSARDKF 524
            |.         :...:.....:..||.||.:.||.|          |...|..|:      |.:|
  Fly   781 RS---------VAASTPPTSAKVVRGYGRVIYLPPI----------EAPTTRAKR------RAQF 820

  Fly   525 IQAQDICVMCGSLGIESDSVMITCAQCGQCYHPYCAGVKPSRGILQKGWRCLDCTVCE------- 582
            ..|..:.....|                            ..|.|..|...||.::.:       
  Fly   821 PSAPGMAATSSS----------------------------DAGNLSFGESSLDASINQPLNTSSL 857

  Fly   583 ------GCGKKNDEARLLLCDECDISYHIYCVNPPLETVPTGNWKCSFCTLCQKCGRNPTEKSEF 641
                  |.|.|....|                .|.:....|...:.......|....:.:|..|.
  Fly   858 SNDSQPGSGPKRPNPR----------------EPSMARRSTAPRRSKKLDASQNNDPDASESQED 906

  Fly   642 GDS-NMLECPSCTSQSSCPVCKVSYSNGEMIIQCEHCELWAHFHCDSVNAQLTIDHYDNNV-YKC 704
            .|. |.|.|          :|:..::|..||. |:.||.|.|..|..|...:..|..:..: :||
  Fly   907 DDDPNKLWC----------ICRQPHNNRFMIC-CDLCEDWFHGTCVGVTKAMGTDMENKGIDWKC 960

  Fly   705 FKC------RCSTRSTNSLA-------DAKFGNEDSLAIT-----------PQGSKPFVHITASS 745
            .||      |...|.|:.|.       :.:......|..|           |:.:.|.| :|.:|
  Fly   961 PKCVKRQEERSQPRITDMLVTRPTTQPEQRPSETKVLTTTAEIVQVAAPSAPRRTLPVV-LTVAS 1024

  Fly   746 GPSFDSKSGAERNHPTLSGDMPESAPEALHWIDGVCLSES-GLGMIKSLSTEIKRKRKMRQALGN 809
            .|.....:...:..||  |.:.....:.|::|.   |..| |..:.::|....||........  
  Fly  1025 SPMRIPMAKPAKKFPT--GAISHQQQQQLNFIR---LGPSPGKRISETLCVVCKRPASTSSVY-- 1082

  Fly   810 GKDGQLEAAAEEALEKYKDGMV--WDGTENAIPEGFTISINDEGVNILRKKRQRNLQKLGIGGFS 872
                    ..||.:.||....:  ...|:..:|:                         ..|..|
  Fly  1083 --------CGEECIRKYAQSAIQAHAATKGPLPQ-------------------------NAGAQS 1114

  Fly   873 VRNRGL--KKDSEETTAVDQINSLMTMDKKKKI-IRKKQKNKLIEAY--PVYLQEAFFGKPLLEG 932
            :.|...  ||:.::....|.:....|:.|.::| :.:::..::|..:  |...|   |.|.|.|.
  Fly  1115 LLNNSFDAKKNKKKDLFEDVLRQADTVSKVERINVFERKSGRVITGHMAPSAHQ---FRKWLQEN 1176

  Fly   933 GELVMADTDSSDEIDASMKVYFTRPEGKSPANQD-TLAVNKSPAKTVKKVKAELKTENKTVFIQQ 996
            ....:..:.:....||..::....||..:..::. .|.|.|.|.:...|:.   ..:|.||....
  Fly  1177 PSFEVLPSGTVQSADAEKRLLKGAPEAATSTSEPAVLGVAKKPPEGPAKLS---HPQNTTVQASH 1238

  Fly   997 M-------PMGIQNKNGTTPVSNVFDPLQAEISNTVFANRHPLDALASPNVPELDMANS-----V 1049
            .       |:..::|..|||.      :||...|.:.|.:        |....:.:..|     :
  Fly  1239 QLGISSVRPLAKKDKEKTTPT------VQAPTPNRIAAGK--------PEPVRIGIRRSLREQLL 1289

  Fly  1050 STVPSAEVIE----KPMRESPAVL-VDSFMVPNQLPQ------------EQKFHNQLY----LGG 1093
            :.:..|:..|    :|..:.|.|| ||.|:...:|..            :.|:.:.::    ...
  Fly  1290 ARIKEAQAAEENSGQPTTQWPTVLEVDQFVKNVELEMFNSFGRDVGAKYKAKYRSLMFNIKDRKN 1354

  Fly  1094 NTL--------VNPAQ-------QLQFRQQAP--QNANKQNMQTI----------MSQVVLQTEK 1131
            .||        |.|.|       ||..::.|.  :..|:..:..|          ....|::|.|
  Fly  1355 RTLFEKICAKQVEPRQLVRMTPEQLASQELAKWREEENRHQLDMIKKSELDLLACAQNYVVKTHK 1419

  Fly  1132 ------------RPEEE-------------QKVVEPVTETLNAGTQK-----TAEKMRKDEDLGL 1166
                        .|||.             ..|.||.|.||...|.:     :.||..|..    
  Fly  1420 GEEVIATKVDVTLPEENVSEASSMADTKQTSLVSEPSTSTLERSTSREKAGSSKEKRHKSH---- 1480

  Fly  1167 MATISAVLYANTEHPNLKELFPIWNDRCKQILKRWRSLCNEKKAPFLQKAKDNRSALRQRREQNK 1231
                        :|.:.|......|.|.:.:.||.|...||.........:::||..:|.||:::
  Fly  1481 ------------KHHHRKRSRSRSNSRGRSVDKRHRRQHNEGGEQPGSGEREHRSREKQSRERDE 1533

  Fly  1232 IPMPPKPQKQEEMGRVWKQPPKLKEDQPNMFVTYN--GNAYDMGNYVGGSAQAASNNPNPHHVMP 1294
            |...|.|:|::|..:  ...||...::......||  ....:....|..:|......|:| ..:|
  Fly  1534 IVPSPLPKKRDENDQ--SPVPKKTAEKKTEASAYNLVDQILESEKTVEQAANLGKPKPSP-KPLP 1595

  Fly  1295 NVNDNLVIKATMQR--TQVH--TTA---ASTLKM 1321
            .:..:|.....|..  ..:|  ||:   :.||||
  Fly  1596 TLPSSLKAPEPMDNYSRYLHGLTTSSLWSGTLKM 1629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987 5/47 (11%)
PHD5_KMT2C_like 580..625 CDD:276988 6/57 (11%)
PHD6_KMT2C_like 657..707 CDD:276989 14/50 (28%)
NHP6B 1101..>1237 CDD:227935 37/184 (20%)
HMG 1173..1231 CDD:197700 14/57 (25%)
ppsNP_001247075.1 TNG2 <827..965 CDD:227367 35/192 (18%)
PHD_PHF3_like 914..963 CDD:277027 15/59 (25%)
BRK 1142..1186 CDD:197800 9/46 (20%)
TFIIS_M 1274..1396 CDD:284835 21/121 (17%)
SPOC 1623..1729 CDD:285043 4/7 (57%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
11.030

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