DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and ash1

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_001246834.1 Gene:ash1 / 40133 FlyBaseID:FBgn0005386 Length:2226 Species:Drosophila melanogaster


Alignment Length:1429 Identity:258/1429 - (18%)
Similarity:443/1429 - (31%) Gaps:519/1429 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 SCLRPVISAIPKYGWKCNRCRVCTDCGSRTPGGGSSSRWHSHYTICDSCYQQRNKGFSCPICQKA 343
            |.:||.:..:                .::.|   ..||..|.......|.:.:|:..|..:..|.
  Fly    63 SAIRPTLGVV----------------ATKKP---PKSRKMSTQDTESGCSEAKNRAVSKKVKVKR 108

  Fly   344 YRAASHKEMVKCSWCNKFVHS-----TCDEEADL-TAYHKKKEQNPDYDYVCPNCKSNSSGPGSS 402
            .:.||...:.|....:|...|     :.|.|.|| ...|:::........:....:|      :|
  Fly   109 KKLASSSGISKSDKVSKSKKSQISAFSSDSEDDLPLKVHQQRAPRVLLSAIIQAAQS------AS 167

  Fly   403 QQTIDSIVLSAMDS---SSEQLSLKEIELD----PLEG---KPTMDPS---------SDELHKLP 448
            :.|:| |.:|:.|:   :..|.::|.:|.|    .:||   |...|.:         .|.:.|  
  Fly   168 KPTLD-IGISSSDNELPNLVQAAIKRVESDTEDTTVEGSFRKAAKDKNLPQYQSTLLQDFMEK-- 229

  Fly   449 TGKKKVCLTSVRGR--SGKFVLHRMG-------VMSQINKKRSTRGKGRQLALPTI----SSDRC 500
                    |.:.|:  :.|....::.       |.:.:.:||  ||:.::: :||:    :|...
  Fly   230 --------TQMLGQTVNAKLAEEKVAKAKEETLVQTAVPRKR--RGRPKKV-VPTVPAPGNSGPA 283

  Fly   501 LSRSMETDLTSDKKLLLCSARDKFIQAQDICVMCGSLGIESDSVMITCAQCGQCYHPYCAGVKPS 565
            ::.|.::.:.|.......:.....:|.:: .|..|||.|.|.|                   || 
  Fly   284 INESADSGVISTTSTTQSTTPSPKMQNEN-AVPTGSLPIASSS-------------------KP- 327

  Fly   566 RGILQKGWRCLDCTVCEGCGKKNDEARLLLCDECDISY---HIYCVN----PPLETVPTGNWKCS 623
                                            :.|::|   .:|...    ||..:....|.|.:
  Fly   328 --------------------------------KIDMAYLDKRMYATERVLYPPPRSKRRQNNKKT 360

  Fly   624 FCTLCQK-------CGRNPTEKSEFGDSNMLECPSCTSQSSCPVC-KVSYSNGEMIIQCEHCELW 680
            .|:...|       ..|......:|...:|....:..:.:|..:| ||..:....:..       
  Fly   361 ACSSSNKEELQLDPLWREIDVNKKFRLRSMSVGAASGTGASTTICSKVLAAKSGYVSD------- 418

  Fly   681 AHFHCDSVNAQLTIDHYDNNVYK-------------CFKCRCSTRSTNSLADAKFGNEDSLAITP 732
                ..||..|.: .|..|:.||             |...|...:|....:|.|           
  Fly   419 ----YGSVRHQRS-SHNHNSGYKSDASCKSRYSTKSCMSRRSRAKSCGYRSDCK----------- 467

  Fly   733 QGSKPFVHITASSGPSFDSKSGA-----ERNHPTLSG-DMPESAPEALHWIDGVCLSESGLGMIK 791
            :..|..:.:......|...||.|     :::...|:| .:.:|:.|:..:|....|        |
  Fly   468 ESGKSGLRMRRKRRASMLLKSSADDTVEDQDILQLAGLSLGQSSEESNEYISKPSL--------K 524

  Fly   792 SLST--------EIKRKRKMRQALGNGKDGQLEAAAEEALEKYKDGMVWDGTENAIPEGFTISIN 848
            ||.|        ||.|.....|..|.|  |.|.|...   :.:...|:....|...|...:..|.
  Fly   525 SLPTTSASKKYGEINRYVTTGQYFGRG--GSLSATNP---DNFISKMMNQRKETPAPSKSSCKIK 584

  Fly   849 D-------------EGVNILRKKRQRNLQKLGIGGFSVRNRGLKKDSEETTAVDQINSLMTMDKK 900
            .             .||:.:|::.:|.       .|| .|:.|..||:..|.::.|.|  |.:.:
  Fly   585 SRRSSAASMCSSYVSGVSRMRRRHRRK-------SFS-HNKSLNIDSKLLTEIEIITS--TFNSR 639

  Fly   901 KKIIRKKQKNKLIEAYPVYLQEAFFGKPLLEGGELVMADTDSSDEIDASMKVYFTRPEGKSPANQ 965
            .:|    |.::|..:               .|.|.::||   ::::.|::       ...|||.|
  Fly   640 CRI----QDDRLTGS---------------SGKEKLLAD---ANKLQATL-------AAPSPAQQ 675

  Fly   966 DTLAVNKSPAKTVKK-VKAELKTEN----------KTVFIQQMPMGIQNKNGTT----------- 1008
            .||. ...||.|:.| :|..||...          .:......|.|..:.||.|           
  Fly   676 LTLN-GGGPASTLSKPLKRGLKKRKLSEPLVDFAMLSASASGTPNGSGSSNGNTKRRHKKSQSND 739

  Fly  1009 ---------PVSN---VFDPLQAEISNTVFAN-RHPLDALASPNVPELDMANSVS-------TVP 1053
                     |:..   :..|.:...:...||| :...:|.|:........|::.|       :|.
  Fly   740 SSSPDDHKLPLKKRHYLLTPGERPPAEVAFANGKLNAEAWAAAAAAAKSTASTKSQAQFNARSVK 804

  Fly  1054 SA------EVIEKPMRESPA----------VLVDSFMVPNQLPQEQKFHNQLYLGGNTL-VNPAQ 1101
            ||      .::|:|...|.|          ::||               |....||..| ::|:.
  Fly   805 SALTPKKRHLLEQPTSVSGAGSSASNSPLRIVVD---------------NNSISGGKLLDISPSS 854

  Fly  1102 QLQFRQQAPQNANKQNMQTIMSQVVLQTEKRPEEEQKVVEPVTETLNAGTQKTAEKMRKDEDLGL 1166
            ....:||....|.||.:......|.||:.........|.||..|   ...|....|:.:      
  Fly   855 LCSLKQQRRGGAAKQKVSAAKDLVQLQSPAGSYPPPGVFEPSVE---LEIQIPLSKLNE------ 910

  Fly  1167 MATISAVLYANTEHPNLKELFPIWNDRCKQI-----------------LKRWRSLCNEKKAPFLQ 1214
                |.:..|..|.|.|..| .|..|..|::                 |||.|...|....|.::
  Fly   911 ----SVITKAEVESPLLSAL-DIKEDTKKEVGQRVVETLLHKTGGNLLLKRKRKKINRTGFPTVR 970

  Fly  1215 KAKDNRS------------------------ALRQRREQNKI-----PMPP-------------- 1236
            :.|...|                        :||:.|..|.:     |.||              
  Fly   971 RKKRKVSVEQQTTAVIDEHEPEFDPDDEPLQSLRETRSSNNVNVQAAPNPPLDCERVPQAGEARE 1035

  Fly  1237 -----------------------------------KPQKQEEMGRVWKQPPKLKED--------- 1257
                                               ||:.:|:.....:.|||.:.:         
  Fly  1036 TFVARTNQKAPRLSVVALERLQRPQTPARGRPRGRKPKNREQAEAAPQPPPKSEPEIRPAKKRGR 1100

  Fly  1258 QPNMFVTYNGNAYDMGNYVGGSAQAASNNPNP--------HHVMPNV--------NDNLVIKATM 1306
            ||.                    |.....|.|        :.:.||:        |.|...|..:
  Fly  1101 QPK--------------------QPVLEEPPPTPPPQQKKNKMEPNIRLPDGIDPNTNFSCKIRL 1145

  Fly  1307 QRTQVHTTAASTLKMTTVDNRLELNTAVYGTEPIGDKKLRNLLQKNSTEPMLMGANSDLFLGNDV 1371
            :|.:                .||.     ||:|..:|.::.:..: ...|.:..:..::....:.
  Fly  1146 KRRK----------------NLEA-----GTQPKKEKPVQPVTVE-EIPPEIPVSQEEIDAEAEA 1188

  Fly  1372 MRLGMMQNTPITQNNPM-LSISGKSQPSEGRSLEQDVKLGEPQEATSSAVELENVGFSDLLGGL 1434
            .||..:.    |:::|: .|.|....|.:..|..:.   .|.:.:|:|..:|..|..:.|:.||
  Fly  1189 KRLDSIP----TEHDPLPASESHNPGPQDYASCSES---SEDKASTTSLRKLSKVKKTYLVAGL 1245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985 3/18 (17%)
PHD_SF 337..392 CDD:304600 11/60 (18%)
PHD4_KMT2C_like 530..578 CDD:276987 9/47 (19%)
PHD5_KMT2C_like 580..625 CDD:276988 7/51 (14%)
PHD6_KMT2C_like 657..707 CDD:276989 12/63 (19%)
NHP6B 1101..>1237 CDD:227935 38/230 (17%)
HMG 1173..1231 CDD:197700 19/98 (19%)
ash1NP_001246834.1 AWS 1340..1388 CDD:197795
SET 1392..1512 CDD:214614
Bromo_ASH1 1680..1787 CDD:99955
PHD_ASH1L 1858..1900 CDD:277023
BAH_polybromo 1929..2073 CDD:240068
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
11.030

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