DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and upSET

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_001261819.1 Gene:upSET / 39551 FlyBaseID:FBgn0036398 Length:3146 Species:Drosophila melanogaster


Alignment Length:1172 Identity:207/1172 - (17%)
Similarity:365/1172 - (31%) Gaps:371/1172 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   374 AYHKKKEQNPDYDYVCP--NCKSNSSGPGSSQQTIDSIVLSAMDSSSEQLSLKEIELDPLEGKPT 436
            |.|.:::|......|.|  ...:.::.|.||:...|.:..|:..:.:.:        .|.:.||.
  Fly  1749 AKHPQQQQQQQQQPVTPVSAATAPAATPSSSESKEDDVSASSTTTPTTR--------TPAKDKPK 1805

  Fly   437 MDPSSDELHKLPTGKKKVCLTSVRGRSGKFVLHRMGVMSQI-------NKKRSTRGKGRQLALPT 494
            ......:|..:....:|:.....||:  |......|...|.       ||:.|:......:..||
  Fly  1806 QSREDRKLEAILRAIEKMEKQEARGK--KDTRQSSGGKRQASNSPASPNKRNSSNSISEDVETPT 1868

  Fly   495 ISSD------------RCLSRSMETDLT-------SDKKLLLCSARDKFIQAQDICVMCGSLGIE 540
            .::.            |.:|||:..:..       |:.|      |.|            |:.:|
  Fly  1869 STNSAAAAAQRRNKKKRKVSRSLNNNTNGLGSGGGSNNK------RRK------------SIVVE 1915

  Fly   541 SD--SVMITCAQC-GQCYHPYCAGVKPSRGILQKGWRCLDCTVCEGCGKKNDEARLLLCDECDIS 602
            ||  |..:|.::. .|..||.                      ....|.::..|.|||.    ::
  Fly  1916 SDGESHALTNSESEDQGQHPQ----------------------SHHSGSEDQAAGLLLA----LA 1954

  Fly   603 YHIYCVNPPLETVPTGNWKCSFCTLCQKCGRNPTEKSEFGDSNMLECPSCTSQSSCPVCKVSYSN 667
            ::....|.|.                    ::|..:|.                |.|....|.|:
  Fly  1955 HNNSSPNEPF--------------------KSPLSQSH----------------SLPATPASVSS 1983

  Fly   668 GEMIIQCEHCELWAHFHCDSVNAQLTIDHYDNNVYKCFKCRCST----------RSTNSLADAKF 722
            ..::|:.....|.......|.:..|....|.....|..|...|:          ...:||..|..
  Fly  1984 ACLLIEAAMGPLQQQPAPASASPSLAEFKYPPGGAKTKKSLMSSWFQQAEQQHASGLDSLVQAAM 2048

  Fly   723 ----GNEDSLAITPQGS----------KPFVHITASSG----------PSFDSKSGAER------ 757
                |..:.|...|||.          :.|:|...|:.          |..::.|..:|      
  Fly  2049 SEINGEREQLQRQPQGESLPAPALLKVEQFIHQAESTTAVPAREQLHLPLQNNSSVKKRWLRQAI 2113

  Fly   758 --------------NHPTLSGDMPESAPEALHWIDGVCLSESGLGMIKSLSTEIKRKRKMRQALG 808
                          |....:...|:..|......:|             .||.:|::|.:  .:.
  Fly  2114 SEETTPVDELQQSQNQSVTATPSPQPVPTVSPLANG-------------FSTPLKKRRLV--VVS 2163

  Fly   809 NGKDGQLEAAAEEALEKYKDGMVWDGTENAIPEGFTISI------NDEGVNILRKK--------R 859
            ||.:.:.:....:.:.:.||    :..||.......:.|      .|:.|:|||..        .
  Fly  2164 NGTNVESDETHIDVIGEPKD----EAEENVAMTELKVEIENHHQEQDDDVDILRSPSPGTHQIVA 2224

  Fly   860 QRNLQKLGIGGFSVRNRGLKKD--SEETTAVDQINSLMTMDKKKKIIRKKQKNKLIEAYPVYLQE 922
            :.||.|:.....|.....:|.|  .||:.|.|:...::.:.::::..|:|:..:|.|.     ||
  Fly  2225 EDNLVKIEPEDTSAAADDVKIDVEREESQACDKFEEMVKVKREEEEQREKEIKQLQER-----QE 2284

  Fly   923 AFFGKPLLEGGELVMADTDSSDEIDASMKVYFTRPEGKSPANQDTLAVNKSPAKTVKKVKAELKT 987
              ..:|.:|..           .::..::....:.|.|...:|:.:: .|.|.|...|....|..
  Fly  2285 --HEQPKVEPA-----------PVEPKLENTVAKAEPKVEPSQEIVS-KKEPTKVEPKPGESLLR 2335

  Fly   988 ENKTVFIQQMPMGIQNKNGTTPVSNVFDPLQAEISNTVFANRHPLDALASP--NVPELD--MANS 1048
            ...||            ..|...:.:......::|...|..|.||.....|  ..|:|:  :...
  Fly  2336 STATV------------TATPTAATIAATTLLDVSKVAFKTRPPLKLEDEPQKKKPKLESILPAP 2388

  Fly  1049 VSTVPSAEVIEKP---------MRESPAVLVDSFMVPNQLP-------QEQ--KFH--NQLYLGG 1093
            |:|||...|...|         :..:.|..:.:...|:...       ||:  .||  |..||  
  Fly  2389 VATVPPVSVPPIPAASNATTSAVTNTAAASLTTTTAPSSTKNLTEHDIQERLLSFHAANISYL-- 2451

  Fly  1094 NTLVNPAQQLQFRQQAPQNANKQNMQTIMSQVVLQTEKRPEEEQKVVEPVTETLNAGTQKTAEKM 1158
                             |:.||:....:       |...|.::       :.:.:.|:...::|.
  Fly  2452 -----------------QSRNKKATAAL-------TSASPSQK-------SNSSSGGSGTESKKS 2485

  Fly  1159 RKDEDLGLMATISAVLYANTEHPNLKELFPIWNDRCKQILKRWRSLCNEKKAPFLQKAKDNRSAL 1223
            .||:|..                         .|:.|| ||:.:....:.|....|||..|.::.
  Fly  2486 SKDKDEK-------------------------RDKEKQ-LKKSKKEKKKSKDKEKQKAAVNVNST 2524

  Fly  1224 RQRRE-QNKIPMPPKPQKQEEMGRVWKQPPKLKEDQPNMFVTYNGNAYDMGNYVGGSAQAASNNP 1287
            .|..: :.|...|.||..:..:..| ..||.|                         ..|.:|..
  Fly  2525 SQIVDTKKKTTQPSKPDSKSSIAPV-LVPPSL-------------------------PVATANGK 2563

  Fly  1288 NPHHVMPNVNDNLVIKATMQRTQVHTTAASTLKMTTVDNRLELNTAVYGTEPIGDKKLRNLLQKN 1352
            ..|....||:.       .|:.|:.....|..........:...:.::||.| ..||.:...::.
  Fly  2564 TKHTAYNNVDQ-------QQQQQMRRRTMSMCITPVTPTPVVTPSPLHGTPP-STKKRQTNFEQE 2620

  Fly  1353 STEPMLMGANSDLFLGNDVMRLGMMQNTPITQNNPMLSISGKSQPSEGRSLEQDVKLGEPQEATS 1417
            .|:|.....:|.:.| |....||:          |:.:.:..|.|:..:. :|..|....||||.
  Fly  2621 LTKPNSQILSSSILL-NSSKGLGL----------PLAAPTVVSVPTAVQQ-QQHRKENNHQEATP 2673

  Fly  1418 SA 1419
            ::
  Fly  2674 AS 2675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600 5/19 (26%)
PHD4_KMT2C_like 530..578 CDD:276987 9/50 (18%)
PHD5_KMT2C_like 580..625 CDD:276988 7/44 (16%)
PHD6_KMT2C_like 657..707 CDD:276989 10/49 (20%)
NHP6B 1101..>1237 CDD:227935 23/136 (17%)
HMG 1173..1231 CDD:197700 11/58 (19%)
upSETNP_001261819.1 PHD_MLL5 856..899 CDD:277025
SET <1221..1273 CDD:214614
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.