DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and brd8b

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:XP_017214481.1 Gene:brd8b / 337414 ZFINID:ZDB-GENE-030722-10 Length:864 Species:Danio rerio


Alignment Length:770 Identity:134/770 - (17%)
Similarity:239/770 - (31%) Gaps:258/770 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   790 IKSLSTEIKRKRKMRQALGNGKDGQLEAAAEEALEKYKDGMVWDGTENAIPEGFTI----SINDE 850
            ::.|..||:.|:|..:.....|....|||       |:.......|...:| ..|:    ..:..
Zfish   138 LEELWAEIELKKKQEEEEAEQKKRATEAA-------YQIRQAAKNTPKRVP-SVTVRSPPGASSP 194

  Fly   851 GVNILRKKRQRNL--------QKLGIGGF----SVRNRGLKKDSEETTAVDQINSLMTMDKKKKI 903
            .::||:....:.:        ...|:..|    .|...|.|:..        ::||:....:||.
Zfish   195 SMDILQPDASQPMTDESCASPMAQGVTVFMPVSDVMGPGPKESG--------LSSLVDDSPQKKH 251

  Fly   904 IRKK-------------QKNKLIEAYPVYLQEAFFGKPLLEGGELVMADTDSSDEIDASMKVYFT 955
            :..|             :|..||.|....:.|......|..|...|...| |:..:.|:..:...
Zfish   252 LAPKATPPPSPLLSELLKKGSLIAASSRLVVEGEVATGLSNGSHAVELHT-SATVLPATQDITAD 315

  Fly   956 RP------EGKSPANQ-----------------DTLAVNKS--------------------PAKT 977
            .|      |..:||.|                 |.|:|.||                    ||: 
Zfish   316 APTLSRLLESVTPAQQPVSADPPKPPTVVPPAPDHLSVPKSGDAAIAEGSGAEAVMAGSSTPAE- 379

  Fly   978 VKKVKAELKTENKTVFIQQM--PMGIQNKNGTTPV--SNVFDPLQAEISNTVFA----------N 1028
            |:..:.||..|:..|.:..|  .:.::.......:  ..|.||::|..:..|.|          .
Zfish   380 VEGKETELVEEDTVVSVSYMGHELDLETVGDIIAIIEEKVDDPVEALDAAAVEAALSLCEDPAVG 444

  Fly  1029 RHPLD----------ALASPNVPELDMANSVSTVPSAEVIEKPMR-------ESPAV--LVDSFM 1074
            .|||.          |...|.:.:..:.....:.|::.:::..|.       |:.||  :.:...
Zfish   445 GHPLTSPWESQTFKAAEPEPMIQQSAIPAGAESAPNSAIVQGEMEVLVEEATETEAVEGVTEEPE 509

  Fly  1075 VPN----QLPQEQKFHNQLYLGGNTLVNPAQQLQFRQQAPQNANKQNMQTIMSQVVLQTEKRPEE 1135
            ||:    :..|:.:...::..||.......:..|...:.|..|             ::.|.....
Zfish   510 VPSAPETEQSQDSEVKTEVERGGEGEGGVEETAQPENRTPSPA-------------VKCEGEDWV 561

  Fly  1136 EQKVVEPVTETLNAGTQKTAEKMRKDEDLGLMATISAVLY------ANTEHPNLKELFP------ 1188
            :.:.|.|..::.::.......|..|:||.|....:...:.      .:.|.|.|.|:.|      
Zfish   562 QPETVTPCLDSEDSSASAKDAKEVKEEDGGSEVDVDEGMEMKECGDGDGEGPYLSEVDPPASESE 626

  Fly  1189 ---------------------------------------IWNDRCKQILKRWRSLCNEKKAP-FL 1213
                                                   ||.   |.|:..||:..|.:.|. ||
Zfish   627 DGYGSHSQRYTTADSTASSPASSQFSMCSEDQEALQAQKIWK---KAIMLVWRAAANHRYASVFL 688

  Fly  1214 QKAKDN-----RSALRQRREQNKIPMPPKPQKQEEMGRVWKQPPKLKEDQPNMF---VTYNGNAY 1270
            |...|:     .|.:.:..:.:.|      :|..|.|:: :...:.:.|...||   |.||.:.:
Zfish   689 QPVSDDIAPGYHSIVHRPMDLSAI------KKNIESGQI-RTTAEFQRDIMLMFQNAVMYNSSDH 746

  Fly  1271 DMGNYVGGSAQAASNNPNPHH--------VMPNVNDNLVIKATMQRTQVHTTAAS---------- 1317
            |:                 :|        |:..:...|..:..||.::...:..|          
Zfish   747 DV-----------------YHMALEMQRDVLEQIQQFLATQLIMQTSESGISTKSLRGREANRKQ 794

  Fly  1318 -----TLKMTTVDNRLELNTAVYGTEPIGDKKLRNLLQKNSTEPMLMGANSDLFL 1367
                 ||.....:..||       .||...:| ||..::::.|...:...|..||
Zfish   795 DPNEKTLSPAHKEPHLE-------PEPPARRK-RNNSKQDTVEKDSLSMASPAFL 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 30/192 (16%)
HMG 1173..1231 CDD:197700 18/114 (16%)
brd8bXP_017214481.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.