DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and Set2

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_572888.2 Gene:Set2 / 32301 FlyBaseID:FBgn0030486 Length:2362 Species:Drosophila melanogaster


Alignment Length:916 Identity:167/916 - (18%)
Similarity:288/916 - (31%) Gaps:298/916 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   712 RSTNSLADAKFGNEDSLA--------------ITPQ-------------GSKPFVHITASSGPSF 749
            |.|.||..|:..:|.|..              :||:             ...|.|.:.:.|....
  Fly   163 RPTQSLIVAQVTSEPSAVGGAHPVQTMAGLPPVTPRKRGRPRKSQLADAAIIPTVIVPSCSDSDT 227

  Fly   750 DSKSGAERNHPTLSGDMPESAPEALHWIDGVCLSESGLGMIKSLSTEIKRKRKMRQALGNGK-DG 813
            :|.|....|..:.||::|           |..:.              |.|.|:|.:|...| .|
  Fly   228 NSTSTTTSNMSSDSGELP-----------GFPIQ--------------KPKSKLRVSLKRLKLGG 267

  Fly   814 QLEAAAEEALEKYKDGMVWDGTENAIPEGFTISINDEGVNILRKKRQRNLQKLGIGGFSVRNRGL 878
            :||::..           .:...::.||....::.||.....|.|:::||.::            
  Fly   268 RLESSDS-----------GNSPSSSSPEVEPPALQDENAMDERPKQEQNLSRM------------ 309

  Fly   879 KKDSEETTAVD-QINSLMTMDKKKKIIRKKQKNKLIEAYP------------------------V 918
             .|:||.:..| ||..:....:..|...::::.:.:|..|                        .
  Fly   310 -VDAEENSDSDSQIIFIEIETESPKGEEEQEEGRPVEVEPQDLIDIDMELAKQEPTPDPEEDLDE 373

  Fly   919 YLQEAFFGKPLLEGGELVMADTDSSDEIDASMKVYFTRPEGKSPANQDTLAVNKSPAKTVKKVKA 983
            .:.|...|.|     .|..||.::.:|.||:  |....|.||.||..   :.:.:|.::.:..  
  Fly   374 IMVEVLSGPP-----SLWSADDEAEEEEDAT--VQRATPPGKEPAAD---SCSSAPRRSRRSA-- 426

  Fly   984 ELKTENKTVFIQQMPMGIQNKNGTTPVSNVFDPLQAEISNTVF--------ANRHPLDALASPNV 1040
                          |:...::.|.| :...|..:.||.|..:.        ..:|.|..|....:
  Fly   427 --------------PLSGSSRQGKT-LEETFAEIAAESSKQILEAEESQDQEEQHILIDLIEDTL 476

  Fly  1041 PELDMANSVSTVPSAEVIEKPMRESPAVLVDSFMVPNQLPQEQKFHNQLYLGGNTLVNPAQQLQF 1105
            .|.::.:|||......|:|:       |:|:.    |||..|          .:.:::..|:...
  Fly   477 SESEVTSSVSPTIEHMVVEE-------VVVEE----NQLVDE----------ADEILDSKQEFVI 520

  Fly  1106 RQQAPQNAN------------KQNMQTIMSQVVLQTEKRPE---EEQKVVEPVTETLNAG----- 1150
            ::...::.|            |...:....:||    .|||   |:..:.|.:..||...     
  Fly   521 KKVFSESDNIAASLNKDIFEPKVETKATCGEVV----PRPEMVTEDVYITEGIAATLEKSAVVTK 581

  Fly  1151 --TQKTAEKMRKDEDLGLMATISAVLYANTE----HPNLKELFPIWNDRCKQILKRWRSLCNEKK 1209
              |:..||....||     ..|...|...::    ...|.|..|..|     |.|..|.|..|.:
  Fly   582 PTTEMIAETKLSDE-----VVIEPPLKDESDPKQTEVELPESKPAVN-----IPKSERILSAEVE 636

  Fly  1210 ------------------APFL--------QKAKDNRSALRQRREQNKIPMPPKPQKQEEMGRVW 1248
                              .|.|        :|:.:|......:.|..|...|| ...:||.....
  Fly   637 TTSSPLVPPECCTLESVSGPVLLETSLSTEEKSNENVETTPLKTEAAKEDSPP-AAPEEEASNSS 700

  Fly  1249 KQPPKLKED-QPNMFVTYNGNAYDMGNYVGGS--------------AQAASNN----PNPHHVMP 1294
            ::|..|.|| :.|.............|..|..              |:..|..    .||....|
  Fly   701 EEPNFLLEDYESNQEQVAEDEMMKCNNQKGQKQTPLPEMKEPEKPVAETVSKKEKAMENPARSSP 765

  Fly  1295 NVNDNLVIKATMQRTQVHTTAASTLKMTTVDNRLELNTAVYGTEPI----GDKKLRNLLQKNSTE 1355
            .:.|..|....|::..|.:|     |.|..:.:::...:.....|.    ..|..:..:.|..||
  Fly   766 AIVDKKVRAGEMEKKVVKST-----KGTVPEKKMDSKKSCAAVTPAKQKESGKSAKEAILKKETE 825

  Fly  1356 PMLMGANSDLFLGNDVMRLG--------MMQNTPITQNNP-------MLSISGKSQPSEGRSLEQ 1405
            .....|..|....|.:.:.|        .:|..|.:...|       ::|.:..:||:       
  Fly   826 KEKSSAKLDSSSPNTLDKKGKDTAQWSPQLQTLPKSSTKPPQESAPSVISKTTSNQPA------- 883

  Fly  1406 DVKLGEPQEATSSAVELENVGFSDLLGGLGEGDDDDLLKSLTS------EMGDDFNILEYADPEL 1464
                  |:|...:|.:           ||.:.....:||:...      |....|..::.|:.:|
  Fly   884 ------PKEEQHAAKK-----------GLSDNSPPSVLKAKEKAVSGFVECDAMFKAMDLANAQL 931

  Fly  1465 DVNVLN 1470
            .::..|
  Fly   932 RLDEKN 937

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 35/187 (19%)
HMG 1173..1231 CDD:197700 15/87 (17%)
Set2NP_572888.2 AWS 1358..1410 CDD:197795
SET 1414..1533 CDD:214614
PostSET 1535..1551 CDD:214703
WW 2014..2043 CDD:278809
SRI 2270..2348 CDD:285448
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
11.030

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