DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lpt and set1

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_587812.1 Gene:set1 / 2538762 PomBaseID:SPCC306.04c Length:920 Species:Schizosaccharomyces pombe


Alignment Length:871 Identity:155/871 - (17%)
Similarity:283/871 - (32%) Gaps:284/871 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   659 PVCKVSYSNGEMIIQCEHCELWAHFHCDSVNAQLTIDHYDNNVYKCFKCRCSTRSTNSLADAKFG 723
            |..:|..||...::..|.    ..:|..|......:|         .|....|.::..|....|.
pombe    92 PPTQVFVSNISPLVTSEQ----LRYHFKSFGEVFDLD---------LKLNPYTGTSLGLCCISFD 143

  Fly   724 NEDSLAITPQGSKPFVHITASSGPSFDSKSGAERNHPTLSGDMPESAPEALHWIDGVCLSESGLG 788
            ...|:::....:|  :.:..::|..|..|              |.|          |.|...|  
pombe   144 KRSSISVAAHSAK--IAVQQANGLRFSGK--------------PLS----------VVLDRDG-- 180

  Fly   789 MIKSLSTEIKRKRKMRQALGNGKDGQLEAAAEEALEKYKDGMVWDGTENAIPEGFTISINDEGVN 853
               ||..|..:|     || |..:.|.:   ||.|:|.:    ::..:.:..:..:.::|::   
pombe   181 ---SLCEEAFKK-----AL-NAVEKQFQ---EETLQKQR----FEREDESSRQKLSAAMNED--- 226

  Fly   854 ILRKKRQ--RNLQKLGIGGF---SVRNRGLKK---DSEETTAVDQINS---LMTMDK-------- 899
             :...||  :|.|.|..|..   .|:|...|.   .|.||.....||.   |:..|:        
pombe   227 -IPPWRQPSKNSQTLSNGDLQHSKVQNVDQKSGFLTSSETDVPKNINDYIYLLIDDRFVPPDRVY 290

  Fly   900 --------KKKIIRKKQKNKLIEAYPVYLQEAFF--GKPLLEGGELVMADTDSSDEIDASMKVYF 954
                    :|.:..|...||          :.|:  .....|......| .|.:...:..:|:.|
pombe   291 YTDIKHHFRKFLYEKIYMNK----------DGFYITFNNYREASNCYRA-LDRTYVQNCRIKLKF 344

  Fly   955 ------TRPEGKSPANQDTLAVNKSPAKTVKKVKAELKTENKTVFIQQMPMGIQNKNGTTPVSNV 1013
                  |:.:||           ||..:.|.....|...|..:|.::.:...:           :
pombe   345 HDIPSRTKEDGK-----------KSAVRRVVLPPEEAYAEATSVVLRDLEAAL-----------L 387

  Fly  1014 FDPLQAEISNTVFANRHPLDALASPNVPELDMANSVSTVPSAEVIEKPMRESPAVLVDSFMVPNQ 1078
            .|.....|...:|...|   ::..|:|.|....|.:  |.|..|.:.|::....|        .:
pombe   388 RDVKSKIIGPAIFKYLH---SMPKPSVKEELQENLL--VSSTSVPDVPLKIESTV--------GK 439

  Fly  1079 LPQEQKFHNQ-------LYLGGNTLVNPAQQLQFRQQAPQNANKQNMQTIMSQVVLQTEKRPEEE 1136
            ||...||..:       |..|..|    ..:||.|::....|...:.|  ::|:...:....|.:
pombe   440 LPSLPKFKKRVDSSKMNLSAGSKT----KSKLQRRRRRRHEARPLHYQ--LNQMYNSSASEAESD 498

  Fly  1137 QKVVEPVTETLNAGTQKTAEKMRKDEDLGLMATISAVLYANTEHPNLKELFPIWNDRCKQILK-- 1199
            |:::      |::|.::.        :.|.:.:|.:|        ...|..|:::|...:..|  
pombe   499 QELL------LSSGDERV--------ERGKIGSIKSV--------KSDEATPVFSDTSDENDKFH 541

  Fly  1200 --RWRSLCNEKKAPFLQKAKDNRSALRQRREQNKIPMP----PK-----------PQKQ------ 1241
              |.:|..::||   .:|.:.:.::..:......|..|    ||           |:|:      
pombe   542 RFRTKSKISKKK---YEKMEVDYTSSSETESDASILSPSAAIPKSGSAIKDELISPKKEIDEVLA 603

  Fly  1242 ----------EEMGRVW-------------------------------------KQPPKLKEDQP 1259
                      :|.|.|:                                     |..|.:..:.|
pombe   604 LAPKWRINEFDETGSVYYGALPYNYPEDDVLLDLDGLQYLVKNDEDYSYLQEALKDEPLMDINDP 668

  Fly  1260 NMF-------------VTYNGNA-------YDMGNYVGGSAQAASNNPNPHHVMPNVNDNLVIKA 1304
            |.:             |.|...|       |...| ..|||::..     ::::|....:|.: .
pombe   669 NFWAYERKSCKFKNGDVKYGDTAILPEPKGYFRSN-TSGSAKSEG-----YYIIPTTEKSLYL-P 726

  Fly  1305 TMQRTQVHTTAASTLKMTTVDNRLELNTAVYGTEPIGDKKLRNLLQKNSTEPMLMGANSDLFLG- 1368
            ...|:.:.|.:.||.::|:..||:.......|.|........:||:.|:    |......|..| 
pombe   727 LRNRSTIDTISHSTSRITSRMNRVNNRRLAAGVEKSQLPAEADLLRFNA----LKARKKQLHFGP 787

  Fly  1369 NDVMRLGMMQNTPITQNNPMLSISGK 1394
            :.:..||:.....|.:|:.::...|:
pombe   788 SRIHTLGLFAMENIDKNDMVIEYIGE 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989 8/47 (17%)
NHP6B 1101..>1237 CDD:227935 24/143 (17%)
HMG 1173..1231 CDD:197700 10/61 (16%)
set1NP_587812.1 RRM <90..>226 CDD:223796 35/190 (18%)
RRM_spSet1p_like 96..180 CDD:240749 20/122 (16%)
SET_assoc 279..342 CDD:288600 9/73 (12%)
SET 457..920 CDD:225491 68/399 (17%)
N-SET 641..771 CDD:288597 23/136 (17%)
SET 783..899 CDD:214614 7/31 (23%)
PostSET 904..920 CDD:214703
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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