DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and Baz1b

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_035844.2 Gene:Baz1b / 22385 MGIID:1353499 Length:1479 Species:Mus musculus


Alignment Length:413 Identity:86/413 - (20%)
Similarity:148/413 - (35%) Gaps:144/413 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   307 RTPGGGSSSRWHSHYTICDSCYQQRNKGFSCPICQKAYRAASHKEMVKCSWCNKFVHSTCDEEAD 371
            |||.|  :.|.|:.|.:    :.....|.                .::..|    ||::.|..  
Mouse   901 RTPIG--TDRNHNRYWL----FSNEVPGL----------------FIEKGW----VHNSIDYR-- 937

  Fly   372 LTAYHKKKEQN-PDYDYVCPNCKSNSSGPGSSQQTIDSIVLSAMDSSSEQLSLKEIELDPLEGKP 435
             ..:|:|...| ||.|| ||..|..:.|..:|........|.|::::.           |.:|:.
Mouse   938 -FKHHRKDHSNLPDDDY-CPRSKKANLGKNASVNAHHGPALEAVETTV-----------PKQGQN 989

  Fly   436 T--MDPSSDELHKLPTGKKKVCLTSVRGRSGKFVLHRMGVM-SQINKKRSTR----------GKG 487
            .  :..|..||.:|.:     |            ||..|:. ||:.::...|          .:.
Mouse   990 LWFLCDSQKELDELLS-----C------------LHPQGIRESQLKERLEKRYQEITHSIYLARK 1037

  Fly   488 RQLALPTISSDRCLSRSMETDL-----------------TSD--------KKL---------LLC 518
            ..|.|.:...::.|...:.:||                 ||:        :||         |..
Mouse  1038 PNLGLKSCDGNQELLNFLRSDLIEVATRLQKGGLGYMEGTSEFEARVISLEKLKDFGECVIALQA 1102

  Fly   519 SARDKF-------------IQAQDICVMCGSLGIESDSVMITCAQCGQCYHPYCAGVKPSR---- 566
            |...||             :|::|   ...|..::.:..|:..|:.......:...::.::    
Mouse  1103 SVIKKFLQGFMAPKQKKRKLQSED---STKSEEVDEEKKMVEEAKVASALEKWKTAIREAQTFSR 1164

  Fly   567 -----GILQKGWRCLDCTV------CEGCGKKNDEARLLLCDECDISYHIYCVNPPLETVPTGNW 620
                 |:|.   .|:...:      |:.|.||.::.:|:|||||:.::|::|:.|.|..||.|.|
Mouse  1165 MHVLLGMLD---ACIKWDMSAENARCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEW 1226

  Fly   621 KCSFC----TLCQKCGRNPTEKS 639
            :|..|    ......|||.||:|
Mouse  1227 QCPACQPPTARRNSRGRNYTEES 1249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600 13/55 (24%)
PHD4_KMT2C_like 530..578 CDD:276987 6/56 (11%)
PHD5_KMT2C_like 580..625 CDD:276988 19/50 (38%)
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935
HMG 1173..1231 CDD:197700
Baz1bNP_035844.2 WAC_Acf1_DNA_bd 21..120 CDD:287503
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 146..212
C motif 207..213
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 302..333
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 376..433
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 448..472
DDT 605..669 CDD:214726
WHIM1 725..770 CDD:292246
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 789..813
WHIM2 900..928 CDD:292247 8/48 (17%)
WHIM3 991..1029 CDD:292248 11/54 (20%)
PHD_BAZ1B 1186..1231 CDD:277098 19/44 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1231..1324 7/19 (37%)
Bromo_WSTF_like 1340..1436 CDD:99937
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1451..1479
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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