DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and sepa-1

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_493339.1 Gene:sepa-1 / 173196 WormBaseID:WBGene00010808 Length:702 Species:Caenorhabditis elegans


Alignment Length:706 Identity:141/706 - (19%)
Similarity:266/706 - (37%) Gaps:196/706 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   773 ALHWIDG--VCLSESGLGMIKSLSTEIKRKRKMRQALGNGKDGQLEAAAEEALEKYKDGMVWDGT 835
            ||:..:|  |.:.....|::...||...:.|.:..|       .|.....:.||:.:    ||..
 Worm   130 ALNGPEGELVVIERDCRGLLSKESTSYGQFRTLPTA-------ALRTLTLQDLERDR----WDRA 183

  Fly   836 ENAIPEGFTISINDEGVNILRKKRQRNLQKLGIGGFSVR-----NRGL----KKDSEETTAVDQI 891
            .|:  :...||..:|..:.|..:.|:||.:     |.||     |:..    .|.|.:.|.::.|
 Worm   184 ANS--DEVKISSGNESFDRLYAEYQKNLPR-----FQVRQCLHLNKEFLCVYSKTSGDYTRLEYI 241

  Fly   892 NSLMTMDKKK----KIIRKKQKNKLIEAYPVYLQEAFFGKPLLEGGELVMADTDSSDEIDASMKV 952
            :.  |.|.:|    ....:..::.||   |:|::.        ...|||: ...:::.......:
 Worm   242 DE--TGDFQKISCTLCTCEVTESNLI---PLYVER--------NASELVI-HVHNTENNQIEQYI 292

  Fly   953 YFTRPEGKSPANQDTLAVNKSPAKTVKKVKAEL------KTENKTVFIQQMPMGIQNKNGTTPVS 1011
            |..|..|       .:.|.::.....||:.:.|      ..:|:.|:     |.::.::|.    
 Worm   293 YDVRTFG-------FVQVKRNLVYDPKKITSGLNLFMAENIDNRKVY-----MIMRGRDGR---- 341

  Fly  1012 NVFDPLQAEISNT-VFANRHPLDALASPNVPELDMANSV-STVPSAEVIE---------KPMRES 1065
                 ||.|.|.: .|....|: |:.:..|..::|.... ....|.|.:|         :.:.|:
 Worm   342 -----LQKETSGSGGFEKMQPV-AVKTFQVQWVEMKTEFEKKKASTERVEPQHPVQTEGEDIMET 400

  Fly  1066 PAVLVDSFMVPNQLPQEQKFHNQLYLGGNTLVNPAQQLQFRQQAPQNANKQNMQTIMSQV-VLQT 1129
            ...:|:||..  .|.:|              :...|..:..::||:..:.:..:.|:..: .||.
 Worm   401 VLAMVESFNC--DLRKE--------------LGLTQDQEIPRKAPRVESAETEENIVKNLEKLQI 449

  Fly  1130 EKRPEEEQKVVEPVTETLNAGTQKTAEKMRKDEDLGLMATISAVLYANTEHPNLKELFPIWN--- 1191
            .|.||      ||.|.....|.....:::......||:..     .|.::|.:..|..|:.|   
 Worm   450 AKDPE------EPTTAASEGGNTYGYQELDDTMSEGLLEK-----EAESKHQDANEPEPVKNVTY 503

  Fly  1192 -------DRCKQILKRWRSLCNEKKAPF--LQKAKDNRSALRQ-------RREQNKIPMPPKPQK 1240
                   |: |:..:..:|..|:..|..  |:|.:..|:..:|       ..|..::..|..|..
 Worm   504 EPDVAAMDK-KKKRRELKSRLNKINAQIDELEKRRMERAGKKQVVSSSVPSEEAAQVEAPASPAL 567

  Fly  1241 QEEMGRVW-KQPPKLKEDQPNMFVTYNGNAYDMGNYVGGSAQAASNNPNPHHVMPNVNDNLV--- 1301
            .|...::. ::.||:     ::|..||      |:::.|:      |.:...::.::.:::|   
 Worm   568 AENTNQISNEETPKI-----DIFEGYN------GSFLFGT------NTSKEWIVEDIRNHMVGKL 615

  Fly  1302 IKATMQRTQVHTTAASTLKMTTVDNRLELNTAVYGTEPIGDKKLRNLLQKNSTEPMLMGANSDLF 1366
            :||...|.|               |..|:|..::       |||....:|..||  ::.|::|  
 Worm   616 LKAFWPRIQ---------------NVEEMNGELF-------KKLIANARKCETE--ILEASND-- 654

  Fly  1367 LGNDVMRLGMMQNTPITQNNPMLSISGKSQPSEGRSLEQDVKLGEPQEATSSAVEL 1422
             .::..||  ||.| :.|      |..|:...:.|:.|.:     .|:.|.|:.||
 Worm   655 -RDEYYRL--MQLT-VDQ------ILKKTLKKDQRATEHN-----HQQPTQSSDEL 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989
NHP6B 1101..>1237 CDD:227935 31/155 (20%)
HMG 1173..1231 CDD:197700 15/76 (20%)
sepa-1NP_493339.1 KIX 600..676 CDD:280354 24/111 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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